RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G002160
Reference: TK1151 Chr: Chr05 Coordinates: 624570-636492 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4547 bp · TkA05G002160|TK1151|cDNA

AAAGATATTTGTATTGGTAGTGTGACTGTGTTGCACATATGTTATTCTTTTTTCTGTTTGTTTGTTTAGGACCAAAAAAATTGTTTGGATGAGATTGACTTAAGCGTCAACAAAAGAAACAGCTCTCAGTTGGGGTAAAGACGGCTGCTGATGACGTTGAAATTATTCAGTTATGGCGTCAACGTTCGCGGAATAGATTTTCTTGATTTGCGCGATTAACCCTTGTTTATAGAATTATAGATGTGTTTCTGCTCCTGTTT...

CDS

Download CDS FASTA

3021 bp · TkA05G002160|TK1151|CDS

ATGGTGGGGAGAAGGAAGCCTCTCGTGCTTTCTTCTACAAAATCACTTCTCAACTCCGTCCTCAATTCATCCGATAAAGAAAAAATAAATGGAATTCACGGTGCTCCGATTAAAAAACACTCCGTCGACGACGACGACGGCGATGGTGATGCACCGACGATGTTGCAGCTGCGTGCGGGTATTCTTAGATTGTCGGAGGACAAATTAGGCGACAAGGTTACTTCCCTCGACTATGCTGCCGTGATTGGACTCTCTACTTC...

Protein

Download Protein FASTA

1006 aa · TkA05G002160|TK1151|PROTEIN

MVGRRKPLVLSSTKSLLNSVLNSSDKEKINGIHGAPIKKHSVDDDDGDGDAPTMLQLRAGILRLSEDKLGDKVTSLDYAAVIGLSTSLLKKLLITSGSLVIVKNVDSQIQRISQVVALDPPLTDHNTSSNNESLSLDSSNTMLIFPSYTFPTNHHIPLATESAYVSPLLAFNLGLHTSCLRLLLHHGETKLASLFDTKQETEVNNDFSVNLDIKPLTKSPRYASHLRASFVKIPECGTIGGLLGTSSIEAENRQEKIDQA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA05G002160
TK1151 IDTkA05G002160
OH-1004 IDLXL04_018869
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.200
Protein coverage (%)TK1151 88.370 / OH-1004 94.217
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G002160
LocationChr05:624570-636492 (+)
DescriptionSimilar to PEX6: Peroxisome biogenesis protein 6
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g03000 Component of the PEX1-PEX6 AAA ATPase complex, a protein dislocase complex that mediates the ATP-dependent extraction of the PEX5 receptor from peroxisomal membranes, an essential step for PEX5 recycling.
An Arabidopsis indole-3-butyric acid-response mutant defective in PEROXIN6, an apparent ATPase implicated in peroxisomal function.2004 · DOI: 10.1073/pnas.0304368101
Functional classification of Arabidopsis peroxisome biogenesis factors proposed from analyses of knockdown mutants.2007 · DOI: 10.1093/pcp/pcm053
Jasmonate biosynthesis in Arabidopsis thaliana requires peroxisomal beta-oxidation enzymes--additional proof by properties of pex6 and aim1.2007 · DOI: 10.1016/j.phytochem.2007.04.024
Peroxisome-associated matrix protein degradation in Arabidopsis.2009 · DOI: 10.1073/pnas.0811329106
Reducing PEX13 expression ameliorates physiological defects of late-acting peroxin mutants.2011 · DOI: 10.1111/j.1600-0854.2010.01136.x

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018869 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006625 protein targeting to peroxisome Biological Process
GO:0006635 fatty acid beta-oxidation Biological Process
GO:0007031 peroxisome organization Biological Process
GO:0016558 protein import into peroxisome matrix Biological Process
GO:0016561 protein import into peroxisome matrix, translocation Biological Process
GO:0016562 protein import into peroxisome matrix, receptor recycling Biological Process
GO:0043335 protein unfolding Biological Process
GO:0050821 protein stabilization Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005777 peroxisome Cellular Component
GO:0005778 peroxisomal membrane Cellular Component
GO:0005829 cytosol Cellular Component
KEGG gene cross-reference
ath:AT1G03000
ddi:DDB_G0292788
hsa:5190
rno:117265
yli:2909504
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Peroxisome0.358
Rank 1 · TkA05G002160 · TK1151
Cytoplasm0.239
Rank 2 · TkA05G002160 · TK1151
Mitochondrion0.232
Rank 3 · TkA05G002160 · TK1151
Nucleus0.129
Rank 4 · TkA05G002160 · TK1151
Plastid0.081
Rank 5 · TkA05G002160 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00004AAA322-342 aa
PF17398NolB322-414 aa
PF03215Rad17364-431 aa
PF13191AAA_16379-431 aa
PF00004AAA381-533 aa
PF07728AAA_5381-417 aa
PF13671AAA_33381-431 aa
PF13207AAA_17384-416 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G002160PF00004AAA3223424.3e-54183.2
TkA05G002160PF17398NolB3224140.2212.8
TkA05G002160PF03215Rad173644310.000520.8
TkA05G002160PF13191AAA_163794310.0009620.4
TkA05G002160PF00004AAA3815334.3e-54183.2
TkA05G002160PF07728AAA_53814170.005217.5
TkA05G002160PF13671AAA_333814310.07314.1
TkA05G002160PF13207AAA_173844160.06514.2
TkA05G002160PF17862AAA_lid_35695892.5e-0730.8
TkA05G002160PF00004AAA6787974.3e-54183.2
TkA05G002160PF13191AAA_167117350.0009620.4
TkA05G002160PF07728AAA_57177340.005217.5
TkA05G002160PF17862AAA_lid_38218552.5e-0730.8
TkA05G002160PF17398NolB9789980.2212.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8RY16Arabidopsis thalianasp|Q8RY16|PEX6_ARATH Peroxisomal ATPase PEX660.600%Swiss-ProtHigh

JBrowse

View in Genome Browser