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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G471850
Reference: TK1151 Chr: Chr04 Coordinates: 119179399-119182022 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1309 bp · TkA04G471850|TK1151|cDNA

AATTCCGAGCAAAAACAAACTCAGTCACCGAGTTCTAACAAGAGAAGGCGAAAAAACATGGCGAGATCGTCGATCCATTTCACGTTAGCAACTGTAGCTCTGTTCTTAGTCTCTTCAGCCGTCGCCGAATACCTGACATTGACACAAGATAACTTCGAGAAGGAGGTCGGTCAAGATCGCGACGCTCTCGTGGAGTTCTACGCTCCCTGGTGTGGGTACTGCAAAAAGATCGCACCTGAATATGAAAGACTTGGTAATGG...

CDS

Download CDS FASTA

657 bp · TkA04G471850|TK1151|CDS

ATGGCGAGATCGTCGATCCATTTCACGTTAGCAACTGTAGCTCTGTTCTTAGTCTCTTCAGCCGTCGCCGAATACCTGACATTGACACAAGATAACTTCGAGAAGGAGGTCGGTCAAGATCGCGACGCTCTCGTGGAGTTCTACGCTCCCTGGTGTGGGTACTGCAAAAAGATCGCACCTGAATATGAAAGACTTGGTAATGGCTTCAAGAAGGCAAAATCCGTATTAATTGGAAAGGTGGATTGTGATGAAGATAAGGA...

Protein

Download Protein FASTA

218 aa · TkA04G471850|TK1151|PROTEIN

MARSSIHFTLATVALFLVSSAVAEYLTLTQDNFEKEVGQDRDALVEFYAPWCGYCKKIAPEYERLGNGFKKAKSVLIGKVDCDEDKDICTKYEVTGYPTFKWFPKGSLEPKKYDGERTADKFADFVNSQAGTYVKVSAVGSNVVSLTSENFNKIVMDNTKHVLVEFSAPWCGHCQNLAPIYESLGDAFKNEADVVIANVNTDNNKKIAERYEVQGIPN

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G471850
TK1151 IDTkA04G471850
OH-1004 IDLXL04_038862
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.500
Protein coverage (%)TK1151 99.541 / OH-1004 60.615
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G471850
LocationChr04:119179399-119182022 (+)
DescriptionSimilar to Probable protein disulfide-isomerase A6
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g47470 Protein disulfide isomerase that may be required for proper pollen development, ovule fertilization and embryo development. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os05g0156300 Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. No verified direct reference in this release
Os01g0339900 Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_038862 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006457 protein folding Biological Process
GO:0009553 embryo sac development Biological Process
GO:0009567 double fertilization forming a zygote and endosperm Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0034976 response to endoplasmic reticulum stress Biological Process
GO:0048868 pollen tube development Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005576 extracellular region Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
GO:0005788 endoplasmic reticulum lumen Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009505 plant-type cell wall Cellular Component
KEGG gene cross-reference
ath:AT2G47470
dosa:Os01g0339900
dosa:Os05g0156300
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.785
Rank 1 · TkA04G471850 · TK1151
Cytoplasm0.149
Rank 2 · TkA04G471850 · TK1151
Lysosome / Vacuole0.125
Rank 3 · TkA04G471850 · TK1151
Golgi apparatus0.082
Rank 4 · TkA04G471850 · TK1151
Extracellular0.076
Rank 5 · TkA04G471850 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26959Thioredoxin-like_N22-64 aa
PF00085Thioredoxin26-127 aa
PF20207PedC-like27-112 aa
PF07912ERp29_N27-134 aa
PF00715IL229-58 aa
PF13098Thioredoxin_238-127 aa
PF13899Thioredoxin_739-58 aa
PF26981Thioredoxin-like_PDI39-58 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G471850PF26959Thioredoxin-like_N22640.003517.9
TkA04G471850PF00085Thioredoxin261275.3e-58194.1
TkA04G471850PF20207PedC-like271126.4e-0833.3
TkA04G471850PF07912ERp29_N271340.0003821.3
TkA04G471850PF00715IL229580.1812.5
TkA04G471850PF13098Thioredoxin_2381274.2e-1040.7
TkA04G471850PF13899Thioredoxin_739587.1e-0730.0
TkA04G471850PF26981Thioredoxin-like_PDI39584.6e-0627.3
TkA04G471850PF08534Redoxin39745.2e-0627.0
TkA04G471850PF00578AhpC-TSA40864.6e-0937.0
TkA04G471850PF13728TraF40660.001219.5
TkA04G471850PF14595Thioredoxin_944660.0006920.2
TkA04G471850PF13905Thioredoxin_845893.4e-0834.5
TkA04G471850PF00462Glutaredoxin49580.03615.0
TkA04G471850PF26298MurL_epimerase_C49820.09213.6
TkA04G471850PF05768Glrx-like50930.06814.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O22263Arabidopsis thalianasp|O22263|PDI21_ARATH Protein disulfide-isomerase like 2-161.300%Swiss-ProtHigh
Q75M08Oryza sativa subsp. japonicasp|Q75M08|PDI21_ORYSJ Protein disulfide isomerase-like 2-164.700%Swiss-ProtHigh
Q942L2Oryza sativa subsp. japonicasp|Q942L2|PDI22_ORYSJ Protein disulfide isomerase-like 2-261.900%Swiss-ProtHigh

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