LXL04_038862 | RubberDandelionOmics

Gene overview

LXL04_038862

Reference: OH-1004 Chr: Chr09 Coordinates: 52100776-52103178 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1077 bp · LXL04_038862|LXL04_038862|OH1004|cDNA

ATGGCGAGATCGTCGATCCATTTCACGTTAGCAACTGTAGCTCTGTTCTTAGTCTCTTCAGCCGTCGCCGAATACCTGACATTGACACAAGATACCTTCGAGAAGGAGGTCGGTCAAGATCGCGACGCTCTCGTGGAGTTCTACGCTCCCTGGTGTGGGTACTGCAAAAAGATCGCACCTGAATATGAAAGACTTGGTAATGGCTTCAAGAAGGCAAAATCCGTATTAATTGGAAAGGTGGATTGTGATGAAGATAAGGA...

CDS

Download CDS FASTA

1077 bp · LXL04_038862|LXL04_038862|OH1004|CDS

ATGGCGAGATCGTCGATCCATTTCACGTTAGCAACTGTAGCTCTGTTCTTAGTCTCTTCAGCCGTCGCCGAATACCTGACATTGACACAAGATACCTTCGAGAAGGAGGTCGGTCAAGATCGCGACGCTCTCGTGGAGTTCTACGCTCCCTGGTGTGGGTACTGCAAAAAGATCGCACCTGAATATGAAAGACTTGGTAATGGCTTCAAGAAGGCAAAATCCGTATTAATTGGAAAGGTGGATTGTGATGAAGATAAGGA...

Protein

Download Protein FASTA

358 aa · LXL04_038862|LXL04_038862|OH1004|PROTEIN

MARSSIHFTLATVALFLVSSAVAEYLTLTQDTFEKEVGQDRDALVEFYAPWCGYCKKIAPEYERLGNGFKKAKSVLIGKVDCDEDKDICTKYEVTGYPTFKWFPKGSLEPKKYDGERTADKFADFVNSQAGTYVKVSAVGSNVVSLTSENFNKIVMDNTKHVLVEFSAPWCGHCQNLAPIYESLGDAFKNEADVVIANVNTDNNKKIAERYEVQGIPKLILFSKDNKDGEGYGGALDLEGLVSFINEKCGTSRDEEGQLT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_038862`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_038862

Location Chr09:52100776-52103178 (+)

Description Similar to Probable protein disulfide-isomerase A6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g47470`	Protein disulfide isomerase that may be required for proper pollen development, ovule fertilization and embryo development.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0156300`	Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds.	No verified direct reference in this release
`Os01g0339900`	Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_038862 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006457 protein folding Biological Process

GO:0009553 embryo sac development Biological Process

GO:0009567 double fertilization forming a zygote and endosperm Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0034976 response to endoplasmic reticulum stress Biological Process

GO:0048868 pollen tube development Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005788 endoplasmic reticulum lumen Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009505 plant-type cell wall Cellular Component

KEGG gene cross-reference

ath:AT2G47470

dosa:Os01g0339900

dosa:Os05g0156300

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.812

Rank 1 · LXL04_038862 · OH-1004

Cytoplasm0.138

Rank 2 · LXL04_038862 · OH-1004

Lysosome / Vacuole0.109

Rank 3 · LXL04_038862 · OH-1004

Extracellular0.074

Rank 4 · LXL04_038862 · OH-1004

Golgi apparatus0.057

Rank 5 · LXL04_038862 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00085.27Thioredoxin26-127 aa

PF04756.20OST3_OST652-136 aa

PF04756.20OST3_OST6140-228 aa

PF00085.27Thioredoxin143-246 aa

PF14595.13Thioredoxin_9144-229 aa

PF20207.5PedC-like145-225 aa

PF13098.14Thioredoxin_2155-239 aa

PF07749.18ERp29264-357 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_038862	`PF00085.27`	Thioredoxin	26	127	1.8e-62	208.5
LXL04_038862	`PF04756.20`	OST3_OST6	52	136	3e-17	63.7
LXL04_038862	`PF04756.20`	OST3_OST6	140	228	3e-17	63.7
LXL04_038862	`PF00085.27`	Thioredoxin	143	246	1.8e-62	208.5
LXL04_038862	`PF14595.13`	Thioredoxin_9	144	229	6.6e-06	26.8
LXL04_038862	`PF20207.5`	PedC-like	145	225	1.2e-08	35.6
LXL04_038862	`PF13098.14`	Thioredoxin_2	155	239	4.8e-13	50.2
LXL04_038862	`PF07749.18`	ERp29	264	357	2.6e-22	80.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O22263`	Arabidopsis thaliana	Protein disulfide-isomerase like 2-1	60.784%	Swiss-Prot	strong database homology
`Q75M08`	Oryza sativa subsp. japonica	Protein disulfide isomerase-like 2-1	61.562%	Swiss-Prot	strong database homology
`Q942L2`	Oryza sativa subsp. japonica	Protein disulfide isomerase-like 2-2	59.459%	Swiss-Prot	strong database homology

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