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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G148550
Reference: TK1151 Chr: Chr04 Coordinates: 38495750-38497899 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2029 bp · TkA04G148550|TK1151|cDNA

CGGGCTTCTCATCTTAGATCTCCAGGAGACCCGAGTTACGTTCTATTTACCCTTTTCAACACCGTCCGACCGCCCTAGTCTCTCTACGTTTGCCTCCACTGCGCCGTCATCTATCACTTAACACTCGACCGCAGCTCTCTACGCCCGTCCAGGCGTCCACTCCACGCACATCTACATCTCACTGTCGCCCGCCACCACCCTCTGCCGTCGCCTAAACCCGCCTCCCCCTTTTTCCGCACCTTTCGATACCTTTTGCTTGT...

CDS

Download CDS FASTA

1497 bp · TkA04G148550|TK1151|CDS

ATGTTCTCAATTGCTCAAATTGATCACAAACTTGTTCATGGGATCTTTTATTTTTGCGGCGTTTCTCGCTCCTTATGTAGCACTAGTAATGGATTCACTGATGGGTTTCAACGAATAGAAAAATACTTAATTGATTACCGAAAAACCTCAAATGGTGATTCAATATCGGATGAGAACCAAGAAGAAGAAGAGTCAATTGATTTCGTCGGCACCAGTGGCAGATACGAAGAAGAAGAAGAACATCATCACCAACAAAACGT...

Protein

Download Protein FASTA

498 aa · TkA04G148550|TK1151|PROTEIN

MFSIAQIDHKLVHGIFYFCGVSRSLCSTSNGFTDGFQRIEKYLIDYRKTSNGDSISDENQEEEESIDFVGTSGRYEEEEEHHHQQNVFSRSSFIRNTKNAAAMALKVLQQDGPGFDAKSALDNLEIQVSGLLVREVLIGILKNINHANRERCVKLGYKFFIWSGQKHKYNHTVNTYHLIMQIFAESEEYKAMWRLLEEMTEKGYPVTSRTFNILICTCGEAGVAKKVVERFIKSKSFNFRPYSHSFNAILHALLSIKQYN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G148550
TK1151 IDTkA04G148550
OH-1004 IDLXL04_030286
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)25.300
Protein coverage (%)TK1151 40.763 / OH-1004 20.232
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G148550
LocationChr04:38495750-38497899 (+)
DescriptionSimilar to At1g77360: Pentatricopeptide repeat-containing protein At1g77360, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g55630 Pentatricopeptide repeat-containing protein At1g55630. No verified direct reference in this release
At3g60050 Pentatricopeptide repeat-containing protein At3g60050. No verified direct reference in this release
At1g52640 Pentatricopeptide repeat-containing protein At1g52640, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030286 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007165 signal transduction Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
GO:0003729 mRNA binding Molecular Function
GO:0004672 protein kinase activity Molecular Function
GO:0004674 protein serine/threonine kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0106310 protein serine kinase activity Molecular Function
KEGG gene cross-reference
ath:AT1G11050
ath:AT1G52640
ath:AT1G71060
ath:AT1G77360
ath:AT2G48010
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.759
Rank 1 · TkA04G148550 · TK1151
Plastid0.168
Rank 2 · TkA04G148550 · TK1151
Nucleus0.065
Rank 3 · TkA04G148550 · TK1151
Cytoplasm0.039
Rank 4 · TkA04G148550 · TK1151
Cell membrane0.013
Rank 5 · TkA04G148550 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF28374Mrp1391-130 aa
PF29070MSC6_N156-263 aa
PF23276TPR_24170-229 aa
PF19189Mtf2172-214 aa
PF26719TPR_Atp25_C172-213 aa
PF28374Mrp13172-236 aa
PF13041PPR_2173-218 aa
PF13812PPR_3173-220 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G148550PF28374Mrp13911300.2711.0
TkA04G148550PF29070MSC6_N1562632e-1970.7
TkA04G148550PF23276TPR_241702291e-1661.7
TkA04G148550PF19189Mtf21722148.4e-0626.3
TkA04G148550PF26719TPR_Atp25_C1722130.007316.3
TkA04G148550PF28374Mrp131722360.2711.0
TkA04G148550PF13041PPR_21732187.1e-73241.3
TkA04G148550PF13812PPR_31732201.5e-43147.4
TkA04G148550PF24760TPR_IF140_C1741990.05214.7
TkA04G148550PF01535PPR1752031.2e-42141.9
TkA04G148550PF30136MSC6_C1802150.01415.5
TkA04G148550PF04055Radical_SAM1862100.000321.7
TkA04G148550PF12854PPR_11942009.1e-43144.4
TkA04G148550PF17177PPR_long1963041.9e-1557.6
TkA04G148550PF12854PPR_12022219.1e-43144.4
TkA04G148550PF01535PPR2102361.2e-42141.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q7X6A5Arabidopsis thalianasp|Q7X6A5|PPR81_ARATH Pentatricopeptide repeat-containing protein At1g5563052.600%Swiss-ProtMedium
Q9M1D8Arabidopsis thalianasp|Q9M1D8|PP288_ARATH Pentatricopeptide repeat-containing protein At3g6005060.700%Swiss-ProtLow
Q9SSR6Arabidopsis thalianasp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640, mitochondrial25.000%Swiss-ProtLow

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