RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G144520
Reference: TK1151 Chr: Chr04 Coordinates: 37444378-37448469 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2436 bp · TkA04G144520|TK1151|cDNA

GAAAAGATGGCATGATTATTGTCGTATCATAATGGTTTCATGCCTATAGAAATCAATATGGTGTGATTCAAAAGAAACGTCAATAGAGTTCTTACTTTCTACGCACCACACAACAATGGCAACTCTACCACTCTTCCTCCCTTTTCAGCCCGCACTTAACCACCACCGCCGGCAACTTCTTATCTTAAATGGACAACGCCGACCTACTTCTTCATCGCCGCTACTCCGTCAGCAACCACTTCGGCTAGCTCTAACCCGCC...

CDS

Download CDS FASTA

2157 bp · TkA04G144520|TK1151|CDS

ATGGCAACTCTACCACTCTTCCTCCCTTTTCAGCCCGCACTTAACCACCACCGCCGGCAACTTCTTATCTTAAATGGACAACGCCGACCTACTTCTTCATCGCCGCTACTCCGTCAGCAACCACTTCGGCTAGCTCTAACCCGCCAGAAACCCAGCTTCATCCCTGCGGCTTACATAACAGGTCCCGCCTCGGATGCAATCGTCGCCGCCGATGATCCGAAGATAGATGAATCAGATTCCACTCCCGAACCGGTGCAGCG...

Protein

Download Protein FASTA

718 aa · TkA04G144520|TK1151|PROTEIN

MATLPLFLPFQPALNHHRRQLLILNGQRRPTSSSPLLRQQPLRLALTRQKPSFIPAAYITGPASDAIVAADDPKIDESDSTPEPVQRFNAISWGLLLKLLSRHKLRVAASIVSLVCCTTCTLSMPILSGKFFEVLIGARSEPLWQLLSKVGVLYTLEPIFTVIFVINMNTIWEKVMSSLRAQIFGSVLIHKVEFFDRYKVGELTALLTSDLGSFKNIVSENISRDRGFRALTEVVGTMCLLFILAPQLAPILGVLMLAVS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G144520
TK1151 IDTkA04G144520
OH-1004 IDLXL04_021286
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)34.300
Protein coverage (%)TK1151 86.769 / OH-1004 91.052
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G144520
LocationChr04:37444378-37448469 (-)
DescriptionSimilar to ABCB25: ABC transporter B family member 25
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g25450 ABC transporter B family member 28. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021286 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006783 heme biosynthetic process Biological Process
GO:0006839 mitochondrial transport Biological Process
GO:0006935 chemotaxis Biological Process
GO:0006972 hyperosmotic response Biological Process
GO:0010044 response to aluminum ion Biological Process
GO:0034514 mitochondrial unfolded protein response Biological Process
GO:0055085 transmembrane transport Biological Process
GO:0070455 positive regulation of heme biosynthetic process Biological Process
GO:0090374 oligopeptide export from mitochondrion Biological Process
GO:0140982 detoxification of aluminum ion Biological Process
GO:0170037 export from the mitochondrion Biological Process
GO:1902602 aluminum ion transmembrane transport Biological Process
KEGG gene cross-reference
ath:AT5G39040
ddi:DDB_G0293416
dosa:Os03g0755100
hsa:23456
mmu:56199
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.958
Rank 1 · TkA04G144520 · TK1151
Mitochondrion0.053
Rank 2 · TkA04G144520 · TK1151
Cytoplasm0.019
Rank 3 · TkA04G144520 · TK1151
Peroxisome0.018
Rank 4 · TkA04G144520 · TK1151
Cell membrane0.016
Rank 5 · TkA04G144520 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00664ABC_membrane108-378 aa
PF00004AAA384-446 aa
PF13175AAA_15406-443 aa
PF02463SMC_N423-682 aa
PF00005ABC_tran426-447 aa
PF00005ABC_tran492-643 aa
PF09818ABC_ATPase497-536 aa
PF03193RsgA_GTPase499-523 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G144520PF00664ABC_membrane1083787.4e-34118.4
TkA04G144520PF00004AAA3844460.03315.3
TkA04G144520PF13175AAA_154064430.01116.1
TkA04G144520PF02463SMC_N4236821.3e-0835.3
TkA04G144520PF00005ABC_tran4264472e-33116.6
TkA04G144520PF00005ABC_tran4926432e-33116.6
TkA04G144520PF09818ABC_ATPase4975360.0003620.4
TkA04G144520PF03193RsgA_GTPase4995230.008216.7
TkA04G144520PF13481AAA_254995250.07413.4
TkA04G144520PF13555AAA_295025190.007816.7
TkA04G144520PF13401AAA_225036490.002518.8
TkA04G144520PF13604AAA_305035360.00816.7
TkA04G144520PF13304AAA_215045250.002818.4
TkA04G144520PF13175AAA_155045440.01116.1
TkA04G144520PF13191AAA_165045390.03715.2
TkA04G144520PF13521AAA_285065500.1313.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8LPQ6Arabidopsis thalianasp|Q8LPQ6|AB28B_ARATH ABC transporter B family member 2870.200%Swiss-ProtHigh

JBrowse

View in Genome Browser