LXL04_021286 | RubberDandelionOmics

Gene overview

LXL04_021286

Reference: OH-1004 Chr: Chr04 Coordinates: 126633894-126637808 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1914 bp · LXL04_021286|LXL04_021286|OH1004|cDNA

ATGGACAGATTCTCCGGTGGAGGTATGCATGGTGTCAGAGGTGAGAGAACTCCGTTGCTTAATAGGAGTAGTTTGAGAAGAGACGATCCATTGGCAAATGGCGAGCAGAATGATCTCGAGCTTGGAGATGCAGTGCCGGCTGCGAATGTGAGTTACGTCAGAGTTCTGTCTCTGGCAAAACCAGAGGCAGGAAGATTGATCATTGGTACTATCGCTTTGTTGATTGCATCCACATCAAGTATTCTGATTCCAAGATTTGG...

CDS

Download CDS FASTA

1914 bp · LXL04_021286|LXL04_021286|OH1004|CDS

ATGGACAGATTCTCCGGTGGAGGTATGCATGGTGTCAGAGGTGAGAGAACTCCGTTGCTTAATAGGAGTAGTTTGAGAAGAGACGATCCATTGGCAAATGGCGAGCAGAATGATCTCGAGCTTGGAGATGCAGTGCCGGCTGCGAATGTGAGTTACGTCAGAGTTCTGTCTCTGGCAAAACCAGAGGCAGGAAGATTGATCATTGGTACTATCGCTTTGTTGATTGCATCCACATCAAGTATTCTGATTCCAAGATTTGG...

Protein

Download Protein FASTA

637 aa · LXL04_021286|LXL04_021286|OH1004|PROTEIN

MDRFSGGGMHGVRGERTPLLNRSSLRRDDPLANGEQNDLELGDAVPAANVSYVRVLSLAKPEAGRLIIGTIALLIASTSSILIPRFGGTIIDIVSGDLQTPEQKSQAVSSVNRTILGILLIVIIGSICTATRAWLFSSASERIVAALRKNLFTHLINQEIAFFDVTRTGELLSRLSEDTQIIKNAATSNVSEILRNLSTAFIGLGFMFATSWKLTLLALVVVPGISIAVRQVGRYLREVSHKTQTAAAVASSIAEETFGA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_021286`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_021286

Location Chr04:126633894-126637808 (-)

Description Similar to ABCB25: ABC transporter B family member 25

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g39040`	Probably involved in redistribution of internalized aluminum.	Arabidopsis ALS1 encodes a root tip and stele localized half type ABC transporter required for root growth in an aluminum toxic environment.2007 · DOI: 10.1007/s00425-006-0452-4

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0755100`	Metal transporter involved in the sequestration of aluminum into vacuoles, which is required for cellular detoxification of aluminum.	A tonoplast-localized half-size ABC transporter is required for internal detoxification of aluminum in rice.2012 · DOI: 10.1111/j.1365-313x.2011.04837.x

Functional annotation source

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Functional annotation source: OH1004 · LXL04_021286 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006783 heme biosynthetic process Biological Process

GO:0006839 mitochondrial transport Biological Process

GO:0006935 chemotaxis Biological Process

GO:0006972 hyperosmotic response Biological Process

GO:0010044 response to aluminum ion Biological Process

GO:0034514 mitochondrial unfolded protein response Biological Process

GO:0055085 transmembrane transport Biological Process

GO:0070455 positive regulation of heme biosynthetic process Biological Process

GO:0090374 oligopeptide export from mitochondrion Biological Process

GO:0140982 detoxification of aluminum ion Biological Process

GO:0170037 export from the mitochondrion Biological Process

GO:1902602 aluminum ion transmembrane transport Biological Process

KEGG gene cross-reference

ath:AT5G39040

ddi:DDB_G0293416

dosa:Os03g0755100

hsa:23456

mmu:56199

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.444

Rank 1 · LXL04_021286 · OH-1004

Cell membrane0.216

Rank 2 · LXL04_021286 · OH-1004

Cytoplasm0.156

Rank 3 · LXL04_021286 · OH-1004

Endoplasmic reticulum0.149

Rank 4 · LXL04_021286 · OH-1004

Golgi apparatus0.122

Rank 5 · LXL04_021286 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00664.29ABC_membrane66-343 aa

PF00005.34ABC_tran409-559 aa

PF02463.26SMC_N488-602 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_021286	`PF00664.29`	ABC_membrane	66	343	2.4e-62	211.8
LXL04_021286	`PF00005.34`	ABC_tran	409	559	5e-35	121.8
LXL04_021286	`PF02463.26`	SMC_N	488	602	1e-05	25.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q0WML0`	Arabidopsis thaliana	ABC transporter B family member 27	73.990%	Swiss-Prot	strong database homology
`Q9FNU2`	Oryza sativa subsp. japonica	ABC transporter B family member 25	74.799%	Swiss-Prot	strong database homology

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