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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G140680
Reference: TK1151 Chr: Chr04 Coordinates: 36392504-36398119 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1528 bp · TkA04G140680|TK1151|cDNA

TTTCCCCTTTTATCCTCTAGAGTCAAAACAGACGCGAGGGATACGAAAGGACGGTAGGATCAGCACACGTGGCCGTTAAATCGCCCCCAAATAAAAACGGGTTTCACGAGAACGCTCTAAACCCAATTGGTGAAGCAAAGCACTGCAACTTAGAGATGAAGGGATCGACGGAGACGAAGTTCTTACAGGAACTGGTGTTGTACGCCGCCAGCGCCGCCCTCAGTTGTCTGGTGCTGTTCGCCGGACTCAAACATCTTGAT...

CDS

Download CDS FASTA

1173 bp · TkA04G140680|TK1151|CDS

ATGAAGGGATCGACGGAGACGAAGTTCTTACAGGAACTGGTGTTGTACGCCGCCAGCGCCGCCCTCAGTTGTCTGGTGCTGTTCGCCGGACTCAAACATCTTGATCCTAATCGAGAAGCTTCGAAGAAAGCCCTTGAACAGAAGAAAGAAATCTCCAAGCGCTTAGGTCGCCCCCTTATCCATACAAATCCATACGAGGATGTGATTGCATGCAACGTGATAAATCCAGATCACATTGATGTTGAATTTGACTCCATTGG...

Protein

Download Protein FASTA

390 aa · TkA04G140680|TK1151|PROTEIN

MKGSTETKFLQELVLYAASAALSCLVLFAGLKHLDPNREASKKALEQKKEISKRLGRPLIHTNPYEDVIACNVINPDHIDVEFDSIGGLETIKQALYELVILPLRRPELFSYGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISDLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRSSDHEALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGLPDRKERAQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G140680
TK1151 IDTkA04G140680
OH-1004 IDLXL04_035379
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)96.800
Protein coverage (%)TK1151 100.000 / OH-1004 85.021
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G140680
LocationChr04:36392504-36398119 (-)
DescriptionSimilar to atad1a: ATPase family AAA domain-containing protein 1-A
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035379 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002092 positive regulation of receptor internalization Biological Process
GO:0009653 anatomical structure morphogenesis Biological Process
GO:0140570 extraction of mislocalized protein from mitochondrial outer membrane Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005741 mitochondrial outer membrane Cellular Component
GO:0005778 peroxisomal membrane Cellular Component
GO:0005829 cytosol Cellular Component
GO:0016020 membrane Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0016887 ATP hydrolysis activity Molecular Function
GO:0140567 membrane protein dislocase activity Molecular Function
KEGG gene cross-reference
bta:506045
hsa:84896
mmu:67979
rno:309532
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Peroxisome0.349
Rank 1 · TkA04G140680 · TK1151
Mitochondrion0.347
Rank 2 · TkA04G140680 · TK1151
Cytoplasm0.172
Rank 3 · TkA04G140680 · TK1151
Endoplasmic reticulum0.106
Rank 4 · TkA04G140680 · TK1151
Nucleus0.100
Rank 5 · TkA04G140680 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00493MCM84-231 aa
PF02367TsaE114-144 aa
PF13481AAA_25115-137 aa
PF12775AAA_7115-143 aa
PF01057Parvo_NS1116-143 aa
PF20720nSTAND3118-262 aa
PF01637ATPase_2118-143 aa
PF05673DUF815119-233 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G140680PF00493MCM842310.001618.3
TkA04G140680PF02367TsaE1141440.01715.8
TkA04G140680PF13481AAA_251151370.0002721.3
TkA04G140680PF12775AAA_71151430.01116.0
TkA04G140680PF01057Parvo_NS11161430.0002321.0
TkA04G140680PF20720nSTAND31182620.000122.7
TkA04G140680PF01637ATPase_21181430.0613.9
TkA04G140680PF05673DUF8151192330.0006119.7
TkA04G140680PF00270DEAD1191360.05214.0
TkA04G140680PF13245AAA_191191420.1313.1
TkA04G140680PF13191AAA_161201555.4e-0524.5
TkA04G140680PF13173AAA_141201890.0001722.3
TkA04G140680PF06068TIP491201580.0005220.0
TkA04G140680PF01695IstB_IS211201870.001319.1
TkA04G140680PF00158Sigma54_activat1201510.007616.7
TkA04G140680PF05621TniB1201420.009216.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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