RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G067470
Reference: TK1151 Chr: Chr04 Coordinates: 17894125-17896990 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1407 bp · TkA04G067470|TK1151|cDNA

TTTACTTTTAGTAGTCTCTTCCGCCCTCAGTCTCTCTCGAAGAGCAATCGGCCACTGCTTGTGTCAACTCTCAGTCTCGAACCCCTTGAATCTCAATTGGAAAATGTGATTGAATCATCTATTGAGGATGAACGGAAGCTGTTTACAGTTTGAAGAAAATCCAATTGAAGATGCTATTTCCAGAATTCGTTTTGCCCCGGCTTCCAACAATCTCCTCATCTCTTCCTGGGATACTAATCTTAGATTGTACGATGTGGATA...

CDS

Download CDS FASTA

981 bp · TkA04G067470|TK1151|CDS

ATGAACGGAAGCTGTTTACAGTTTGAAGAAAATCCAATTGAAGATGCTATTTCCAGAATTCGTTTTGCCCCGGCTTCCAACAATCTCCTCATCTCTTCCTGGGATACTAATCTTAGATTGTACGATGTGGATAGATCTAGGTTAATTTTTGAAGCTTCCGGGGAAGCTGCACTTCTAGACTGCTGTTTCCAAGGGGAATCAGCTGCCTTCAGTGCCGCTTCTGATTGTTCCATAACTAGATATGATTTACATTTAGGGAC...

Protein

Download Protein FASTA

326 aa · TkA04G067470|TK1151|PROTEIN

MNGSCLQFEENPIEDAISRIRFAPASNNLLISSWDTNLRLYDVDRSRLIFEASGEAALLDCCFQGESAAFSAASDCSITRYDLHLGTKDFFGNHDDLATCVEYSDETGQIVSGGWDKKIKCWDSRSTKGLTCVNSVSVGVKSISLSGFTAMVAVGVSVKMYDLRKFNKSVDSKCVEIQIECIRPYLNQGFAAGSTDGRVALKYFNPSSQNTDGYAFRCQPKSKEKRDYFAAVNDIVFSPSNFGDFVTGDNKGFVTIWNAQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G067470
TK1151 IDTkA04G067470
OH-1004 IDLXL04_036176
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.400
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G067470
LocationChr04:17894125-17896990 (-)
DescriptionSimilar to BUB3.3: Mitotic checkpoint protein BUB3.3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g69400 Has a dual function in spindle-assembly checkpoint signaling and in promoting the establishment of correct kinetochore-microtubule (K-MT) attachments. No verified direct reference in this release
At3g19590 Has a dual function in spindle-assembly checkpoint signaling and in promoting the establishment of correct kinetochore-microtubule (K-MT) attachments.
The Arabidopsis checkpoint protein Bub3.1 is essential for gametophyte development.2008 · DOI: 10.2741/3076
Spindle assembly checkpoint protein dynamics reveal conserved and unsuspected roles in plant cell division.2009 · DOI: 10.1371/journal.pone.0006757
At1g49910 Has a dual function in spindle-assembly checkpoint signaling and in promoting the establishment of correct kinetochore-microtubule (K-MT) attachments. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036176 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007059 chromosome segregation Biological Process
GO:0007094 mitotic spindle assembly checkpoint signaling Biological Process
GO:0051301 cell division Biological Process
GO:0051321 meiotic cell cycle Biological Process
GO:0051983 regulation of chromosome segregation Biological Process
GO:0000776 kinetochore Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005819 spindle Cellular Component
GO:0005828 kinetochore microtubule Cellular Component
GO:0005876 spindle microtubule Cellular Component
GO:0009524 phragmoplast Cellular Component
KEGG gene cross-reference
ath:AT1G49910
ath:AT1G69400
ath:AT3G19590
ddi:DDB_G0292134
pon:100172494
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.633
Rank 1 · TkA04G067470 · TK1151
Cytoplasm0.394
Rank 2 · TkA04G067470 · TK1151
Lysosome / Vacuole0.047
Rank 3 · TkA04G067470 · TK1151
Cell membrane0.043
Rank 4 · TkA04G067470 · TK1151
Mitochondrion0.028
Rank 5 · TkA04G067470 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23775Beta-prop_RIG_2nd8-46 aa
PF24817WD40_WDHD1_1st9-51 aa
PF25171Beta-prop_WDR36-Utp21_1st9-122 aa
PF25168Beta-prop_WDR36-Utp21_2nd11-87 aa
PF24796WDR5513-202 aa
PF24807WD40_CDC20-Fz13-148 aa
PF25172Beta-prop_WDR3_2nd13-159 aa
PF23098Beta-prop_NOL10_N13-68 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G067470PF23775Beta-prop_RIG_2nd8463.3e-0524.2
TkA04G067470PF24817WD40_WDHD1_1st9511.2e-0835.3
TkA04G067470PF25171Beta-prop_WDR36-Utp21_1st91225e-0833.4
TkA04G067470PF25168Beta-prop_WDR36-Utp21_2nd11871.3e-0835.2
TkA04G067470PF24796WDR55132029.4e-1451.9
TkA04G067470PF24807WD40_CDC20-Fz131484.6e-1349.9
TkA04G067470PF25172Beta-prop_WDR3_2nd131591.8e-0937.9
TkA04G067470PF23098Beta-prop_NOL10_N13680.003217.4
TkA04G067470PF23389Beta-prop_WDR19_1st13490.01415.1
TkA04G067470PF25175Beta-prop_WDR5141532e-1970.7
TkA04G067470PF25174Beta-prop_THOC314681e-1661.5
TkA04G067470PF00400WD4014425.7e-1452.6
TkA04G067470PF23414Beta-prop_EML_214466.6e-1349.4
TkA04G067470PF23409Beta-prop_EML141282.1e-1041.3
TkA04G067470PF12894ANAPC4_WD4014540.0002821.8
TkA04G067470PF23342WDR90_beta-prop_4th14350.01914.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4I241Arabidopsis thalianasp|F4I241|BUB33_ARATH Mitotic checkpoint protein BUB3.348.100%Swiss-ProtMedium
Q9LJN8Arabidopsis thalianasp|Q9LJN8|BUB31_ARATH Mitotic checkpoint protein BUB3.139.200%Swiss-ProtMedium
Q9C701Arabidopsis thalianasp|Q9C701|BUB32_ARATH Mitotic checkpoint protein BUB3.238.600%Swiss-ProtMedium

JBrowse

View in Genome Browser