TkA04G066840 | RubberDandelionOmics

Gene overview

TkA04G066840

Reference: TK1151 Chr: Chr04 Coordinates: 17713220-17716686 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1089 bp · TkA04G066840|TK1151|cDNA

ATGAATGAACTAGAAGCATGCAACTGGTCACAAGGGTTTGAAGATGATCTTCTAAGAGAGCTTCTTTACGACGAATCCCCATATCTTCTTTTGCCTCAAAAAATCGCTAGTGATTCATTAGACAATCACTCGGTAAACAATTTGATATCAAGCATATATTCTGGCCCCACAATAACGGATTTTGAAAAAGCACTAGAGGCTTCAAGTGACACAAATAATAATACTCCTGATTTTTCAGCATTGACCAGAATTGCAGATAT...

CDS

Download CDS FASTA

1089 bp · TkA04G066840|TK1151|CDS

ATGAATGAACTAGAAGCATGCAACTGGTCACAAGGGTTTGAAGATGATCTTCTAAGAGAGCTTCTTTACGACGAATCCCCATATCTTCTTTTGCCTCAAAAAATCGCTAGTGATTCATTAGACAATCACTCGGTAAACAATTTGATATCAAGCATATATTCTGGCCCCACAATAACGGATTTTGAAAAAGCACTAGAGGCTTCAAGTGACACAAATAATAATACTCCTGATTTTTCAGCATTGACCAGAATTGCAGATAT...

Protein

Download Protein FASTA

362 aa · TkA04G066840|TK1151|PROTEIN

MNELEACNWSQGFEDDLLRELLYDESPYLLLPQKIASDSLDNHSVNNLISSIYSGPTITDFEKALEASSDTNNNTPDFSALTRIADMERGVPRVENKYVLKIKCSGNVMADDGYKWRKYGQKSIKNSSNPRSYYKCTNPRCGAKKQVERSSEDHETLIITYEGLHLHYMYPFFIFGQSENLDPPTKKFRTLNFEPGAHQNYKQPTIDMDENIGHVSHDLPSTMLRDYQEGLPEEVPINSQVKLKSIIEITWRITWFTASF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G066840`
TK1151 ID	TkA04G066840
OH-1004 ID	LXL04_036164
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	97.200
Protein coverage (%)	TK1151 97.514 / OH-1004 46.023 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G066840

Location Chr04:17713220-17716686 (+)

Description Similar to WRKY49: Probable WRKY transcription factor 49

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g43290`	Transcription factor.	No verified direct reference in this release
`At1g69310`	Transcription factor.	No verified direct reference in this release
`At2g44745`	Transcription factor.	No verified direct reference in this release
`At5g13080`	Transcription factor.	No verified direct reference in this release
`At2g46130`	Transcription factor.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036164 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:0009863 salicylic acid mediated signaling pathway Biological Process

GO:0010055 atrichoblast differentiation Biological Process

GO:0032107 regulation of response to nutrient levels Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0048527 lateral root development Biological Process

KEGG gene cross-reference

ath:AT1G69310

ath:AT2G04880

ath:AT5G13080

ath:AT5G43290

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.783

Rank 1 · TkA04G066840 · TK1151

Cytoplasm0.261

Rank 2 · TkA04G066840 · TK1151

Mitochondrion0.039

Rank 3 · TkA04G066840 · TK1151

Cell membrane0.035

Rank 4 · TkA04G066840 · TK1151

Endoplasmic reticulum0.022

Rank 5 · TkA04G066840 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03106WRKY111-167 aa

PF04606Ogr_Delta131-146 aa

PF03106WRKY270-297 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G066840	`PF03106`	WRKY	111	167	3.7e-25	88.6
TkA04G066840	`PF04606`	Ogr_Delta	131	146	0.062	14.0
TkA04G066840	`PF03106`	WRKY	270	297	3.7e-25	88.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FHR7`	Arabidopsis thaliana	sp\|Q9FHR7\|WRK49_ARATH Probable WRKY transcription factor 49	44.000%	Swiss-Prot	Low
`Q9C983`	Arabidopsis thaliana	sp\|Q9C983\|WRK57_ARATH Probable WRKY transcription factor 57	62.900%	Swiss-Prot	Low
`Q93WY4`	Arabidopsis thaliana	sp\|Q93WY4\|WRK12_ARATH Probable WRKY transcription factor 12	56.200%	Swiss-Prot	Low
`Q9FYA2`	Arabidopsis thaliana	sp\|Q9FYA2\|WRK75_ARATH Probable WRKY transcription factor 75	47.900%	Swiss-Prot	Low
`Q8GY11`	Arabidopsis thaliana	sp\|Q8GY11\|WRK43_ARATH Probable WRKY transcription factor 43	45.200%	Swiss-Prot	Low

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