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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G058910
Reference: TK1151 Chr: Chr04 Coordinates: 15710897-15715091 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2623 bp · TkA04G058910|TK1151|cDNA

TAGAATTTGAGCCATACATTTTCTCAAATTGCCCCAAATTATCTCCCACCTCTTCCGATATCTCTGTTACTATCGTTAAATCCCCAACCATTTTAAACTCAATGAACACCTCTCACTTCCAATTATAGTACTTCCCTTCCATCCCATTTTGATATCCCTCTTTCTCTGTTCATAGACTGTGAACGGAGACCGAGCTAACAGCAATGGAGATGGCGGTCGGAATACACAATTATGTCACTCCCACGCTTAACCCTAATCAC...

CDS

Download CDS FASTA

2052 bp · TkA04G058910|TK1151|CDS

ATGGAGATGGCGGTCGGAATACACAATTATGTCACTCCCACGCTTAACCCTAATCACAGAAACTCCTCTTTTTCTTCGTCTATCCTCAGAACCCAACTTCCAGTTGGTCGCACCTTATCTTCTTTTTCTTCTTCCACCATCAAGTCTCCATCCTTTTCTCATTCGAGAAGAAACCCACTTCACAGTTTCATCAAGTGCTCTGTTTCTGAAGCTGAGGCAACTGAAACTGTCACTGAGAAAAAAGTTGCATTAGTGAGGAG...

Protein

Download Protein FASTA

683 aa · TkA04G058910|TK1151|PROTEIN

MEMAVGIHNYVTPTLNPNHRNSSFSSSILRTQLPVGRTLSSFSSSTIKSPSFSHSRRNPLHSFIKCSVSEAEATETVTEKKVALVRRNDIRNIAIVAHVDHGKTTLVDAMLKQAKVFRDNQVVEERIMDSNDLERERGITILSKNTSITYKDTKMNIIDTPGHSDFGGEVERVLNMVEGIILVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPEFVINSTFELFIELNASDEQCDFQAVYASGIKGMAGLS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G058910
TK1151 IDTkA04G058910
OH-1004 IDLXL04_036270
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G058910
LocationChr04:15710897-15715091 (+)
DescriptionSimilar to SVR3: Putative elongation factor TypA-like SVR3, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g13650 Putative chloroplastic elongation factor involved in response to chilling stress.
A var2 leaf variegation suppressor locus, SUPPRESSOR OF VARIEGATION3, encodes a putative chloroplast translation elongation factor that is important for chloroplast development in the cold.2010 · DOI: 10.1186/1471-2229-10-287

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036270 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000027 ribosomal large subunit assembly Biological Process
GO:0000302 response to reactive oxygen species Biological Process
GO:0006364 rRNA processing Biological Process
GO:0009409 response to cold Biological Process
GO:0010467 gene expression Biological Process
GO:0010468 regulation of gene expression Biological Process
GO:0031425 chloroplast RNA processing Biological Process
GO:0032790 ribosome disassembly Biological Process
GO:0050821 protein stabilization Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
KEGG gene cross-reference
ath:AT5G13650
bsu:BSU14770
sfl:SF3941
sfx:S3805
stm:STM4009
syn:slr1105
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.934
Rank 1 · TkA04G058910 · TK1151
Mitochondrion0.096
Rank 2 · TkA04G058910 · TK1151
Cytoplasm0.023
Rank 3 · TkA04G058910 · TK1151
Nucleus0.020
Rank 4 · TkA04G058910 · TK1151
Peroxisome0.013
Rank 5 · TkA04G058910 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF21317BetaGal_ABD_177-99 aa
PF00009GTP_EFTU89-280 aa
PF09439SRPRB91-187 aa
PF02421FeoB_N92-112 aa
PF00735Septin92-166 aa
PF01926MMR_HSR193-214 aa
PF08477Roc98-216 aa
PF00025Arf101-111 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G058910PF21317BetaGal_ABD_177990.1312.9
TkA04G058910PF00009GTP_EFTU892802.6e-53181.1
TkA04G058910PF09439SRPRB911870.0002921.0
TkA04G058910PF02421FeoB_N921120.0004120.6
TkA04G058910PF00735Septin921660.001518.6
TkA04G058910PF01926MMR_HSR1932145.8e-0627.1
TkA04G058910PF08477Roc982160.1513.0
TkA04G058910PF00025Arf1011110.001818.5
TkA04G058910PF00350Dynamin_N1142140.1412.9
TkA04G058910PF02421FeoB_N1382180.0004120.6
TkA04G058910PF00025Arf1402320.001818.5
TkA04G058910PF22042EF-G_D22913743e-0937.6
TkA04G058910PF03144GTP_EFTU_D23043747.8e-1143.0
TkA04G058910PF14492EFG_III3804010.0003921.1
TkA04G058910PF21317BetaGal_ABD_14124770.1312.9
TkA04G058910PF14492EFG_III4154610.0003921.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4K410Arabidopsis thalianasp|F4K410|SVR3_ARATH Putative elongation factor TypA-like SVR3, chloroplastic79.600%Swiss-ProtHigh

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