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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G012460
Reference: TK1151 Chr: Chr04 Coordinates: 3107752-3113680 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2425 bp · TkA04G012460|TK1151|cDNA

CAAAGGTCCGTTTTAAAATAGCAGCGCGCAGATTAGCATCATATTGGAAAAATATTTAGAGCGGGAGCGCACGTTAGCACAAAATCTCAAAAAAGAGAGGGGAAATATTTTATTCGTTCAAGGGCGGGTGTTGAATTTCTAATTCGTATATTTTAAAATCCTAAATTGCTTTCTCCACATTTCGTTTTCACTTTCACACTCTCCCTTGTGTAAACCGTAATTTCTCTTTCCCCAATTTACCCGTACTTTCGATCTCTCAT...

CDS

Download CDS FASTA

2106 bp · TkA04G012460|TK1151|CDS

ATGGCGGAGCATCGGAGACGCCATGAACAACCTACTAACTCCGTTAGAAGAAGCCTGAAGAGGAAGCTGGAGGAGGAAGTCATCGTAGATCATGATATTTCTTCTTCAGAGGACGTTTCTCAACAAGATCTATTATGTGAAATCCGTGCTCAGGTTGAAGTCCTAGATTCTACTTTCTCATCGAGTGAAGCAGATCGTGCTAAAGTCAAACGCTCTGTTCATATCCTCTCCGAGCTCGCTAAGAATGAGGATATTGTGAA...

Protein

Download Protein FASTA

701 aa · TkA04G012460|TK1151|PROTEIN

MAEHRRRHEQPTNSVRRSLKRKLEEEVIVDHDISSSEDVSQQDLLCEIRAQVEVLDSTFSSSEADRAKVKRSVHILSELAKNEDIVNMIVESGAVPALVPHLQLSQSREDVTGPMLYEHEVEKRSAFTLGLLAIKPEHQQYIVDAGALPHLVALLKRQPTGQCSRAVNGTIRKAADAITNLSHENGSIKSLVRIEGGIPPLVELLESSDAKVQRAAAGALRALAFKNHENKSQIVDCNALPTLVLMLQSEDAAIHYEAVG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G012460
TK1151 IDTkA04G012460
OH-1004 IDLXL04_036975
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G012460
LocationChr04:3107752-3113680 (-)
DescriptionSimilar to ARIA: ARM REPEAT PROTEIN INTERACTING WITH ABF2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g19330 May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity).
ARIA, an Arabidopsis arm repeat protein interacting with a transcriptional regulator of abscisic acid-responsive gene expression, is a novel abscisic acid signaling component.2004 · DOI: 10.1104/pp.104.049189
At5g13060 May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity).
ABAP1 is a novel plant Armadillo BTB protein involved in DNA replication and transcription.2008 · DOI: 10.1038/emboj.2008.191

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036975 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000011 vacuole inheritance Biological Process
GO:0000045 autophagosome assembly Biological Process
GO:0000425 pexophagy Biological Process
GO:0006261 DNA-templated DNA replication Biological Process
GO:0008285 negative regulation of cell population proliferation Biological Process
GO:0009651 response to salt stress Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0010187 negative regulation of seed germination Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0034517 ribophagy Biological Process
GO:0034727 piecemeal microautophagy of the nucleus Biological Process
GO:0042127 regulation of cell population proliferation Biological Process
KEGG gene cross-reference
ath:AT5G13060
ath:AT5G19330
ncr:NCU01470
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.582
Rank 1 · TkA04G012460 · TK1151
Nucleus0.384
Rank 2 · TkA04G012460 · TK1151
Cell membrane0.097
Rank 3 · TkA04G012460 · TK1151
Mitochondrion0.057
Rank 4 · TkA04G012460 · TK1151
Golgi apparatus0.053
Rank 5 · TkA04G012460 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03224V-ATPase_H_N33-243 aa
PF25598ARM_PUB52-109 aa
PF11841ELMO_ARM60-107 aa
PF30701ARMC664-112 aa
PF30699ARM_GAC_264-111 aa
PF24768ARM_ARMC569-109 aa
PF28415SIL1_FES1_HPBP1_C72-106 aa
PF09759Atx10homo_assoc73-115 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G012460PF03224V-ATPase_H_N332431.9e-0834.9
TkA04G012460PF25598ARM_PUB521092.3e-1351.0
TkA04G012460PF11841ELMO_ARM601076.7e-0523.5
TkA04G012460PF30701ARMC6641121.9e-1040.6
TkA04G012460PF30699ARM_GAC_2641110.0006119.0
TkA04G012460PF24768ARM_ARMC5691098.7e-2588.4
TkA04G012460PF28415SIL1_FES1_HPBP1_C721066.5e-1452.7
TkA04G012460PF09759Atx10homo_assoc731157.4e-0626.5
TkA04G012460PF04826Arm_274980.02115.0
TkA04G012460PF26017BACK_BTBD8791110.2612.3
TkA04G012460PF00514Arm861071.8e-51171.4
TkA04G012460PF13513HEAT_EZ941031e-1145.8
TkA04G012460PF28415SIL1_FES1_HPBP1_C1191586.5e-1452.7
TkA04G012460PF24768ARM_ARMC51211728.7e-2588.4
TkA04G012460PF13513HEAT_EZ1261561e-1145.8
TkA04G012460PF30701ARMC61272801.9e-1040.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
B9DHT4Arabidopsis thalianasp|B9DHT4|ARIA_ARATH ARM REPEAT PROTEIN INTERACTING WITH ABF275.200%Swiss-ProtHigh
B7U179Arabidopsis thalianasp|B7U179|ABAP1_ARATH ARMADILLO BTB ARABIDOPSIS PROTEIN 163.900%Swiss-ProtHigh

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