Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2106 bp · LXL04_036975|LXL04_036975|OH1004|cDNA
ATGGCGGAGCATCGGAGACGCCATGAACAACCTACTAACTCCGTTAGAAGAAGCCTGAAGAGGAAGCTGGAGGAGGAAGTCATCGTAGATCATGATATTTCTTCTTCAGAGGACGTTTCTCAACAAGATCTATTATGTGAAATCCGTGCTCAGGTTGAAGTCCTAGATTCTACTTTCTCATCGAGTGAAGCAGATCGTGCTAAAGTCAAACGCTCTGTTCATATCCTCTCCGAGCTCGCTAAGAATGAGGATATTGTGAA...
2106 bp · LXL04_036975|LXL04_036975|OH1004|CDS
ATGGCGGAGCATCGGAGACGCCATGAACAACCTACTAACTCCGTTAGAAGAAGCCTGAAGAGGAAGCTGGAGGAGGAAGTCATCGTAGATCATGATATTTCTTCTTCAGAGGACGTTTCTCAACAAGATCTATTATGTGAAATCCGTGCTCAGGTTGAAGTCCTAGATTCTACTTTCTCATCGAGTGAAGCAGATCGTGCTAAAGTCAAACGCTCTGTTCATATCCTCTCCGAGCTCGCTAAGAATGAGGATATTGTGAA...
Protein
Download Protein FASTA701 aa · LXL04_036975|LXL04_036975|OH1004|PROTEIN
MAEHRRRHEQPTNSVRRSLKRKLEEEVIVDHDISSSEDVSQQDLLCEIRAQVEVLDSTFSSSEADRAKVKRSVHILSELAKNEDIVNMIVESGAVPALVPHLQLSQSREDVTGPMLYEHEVEKRSAFTLGLLAIKPEHQQYIVDAGALPHLVALLKRQPTGQCSRAVNGTIRKAADAITNLSHENGSIKSLVRIEGGIPPLVELLESSDAKVQRAAAGALRALAFKNHENKSQIVDCNALPTLVLMLQSEDAAIHYEAVG...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_036975 |
|---|---|
| TK1151 ID | TkA04G012460 |
| OH-1004 ID | LXL04_036975 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_036975 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr08:51152358-51157967 (+) | |||||||||
| Description | Similar to ARIA: ARM REPEAT PROTEIN INTERACTING WITH ABF2 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0000011 vacuole inheritance Biological Process GO:0000045 autophagosome assembly Biological Process GO:0000425 pexophagy Biological Process GO:0006261 DNA-templated DNA replication Biological Process GO:0008285 negative regulation of cell population proliferation Biological Process GO:0009651 response to salt stress Biological Process GO:0009737 response to abscisic acid Biological Process GO:0010187 negative regulation of seed germination Biological Process GO:0016567 protein ubiquitination Biological Process GO:0034517 ribophagy Biological Process GO:0034727 piecemeal microautophagy of the nucleus Biological Process GO:0042127 regulation of cell population proliferation Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT5G13060 ath:AT5G19330 ncr:NCU01470 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF30701.1ARMC6127-280 aaPF24714.2TOR1L1_N165-314 aaPF24768.2ARM_ARMC5173-387 aaPF25598.2ARM_PUB173-410 aaPF00514.30Arm189-223 aaPF13646.13HEAT_2198-265 aaPF00514.30Arm227-266 aaPF28415.2SIL1_FES1_HPBP1_C275-378 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_036975 | PF30701.1 | ARMC6 | 127 | 280 | 1.9e-10 | 40.6 |
| LXL04_036975 | PF24714.2 | TOR1L1_N | 165 | 314 | 3.9e-06 | 27.1 |
| LXL04_036975 | PF24768.2 | ARM_ARMC5 | 173 | 387 | 8.7e-25 | 88.4 |
| LXL04_036975 | PF25598.2 | ARM_PUB | 173 | 410 | 2.3e-13 | 51.0 |
| LXL04_036975 | PF00514.30 | Arm | 189 | 223 | 1.8e-51 | 171.4 |
| LXL04_036975 | PF13646.13 | HEAT_2 | 198 | 265 | 3.7e-14 | 53.5 |
| LXL04_036975 | PF00514.30 | Arm | 227 | 266 | 1.8e-51 | 171.4 |
| LXL04_036975 | PF28415.2 | SIL1_FES1_HPBP1_C | 275 | 378 | 6.5e-14 | 52.7 |
| LXL04_036975 | PF00651.38 | BTB | 534 | 634 | 2.2e-23 | 83.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.