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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G611290
Reference: TK1151 Chr: Chr03 Coordinates: 155230876-155238941 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

5568 bp · TkA03G611290|TK1151|cDNA

CACATGTATTTATCGAGTAAATTACCCAATAACATTCGTGATTTACAAAATCTAACAAAATCACGTCACGTATGGCACAAAGCTACTAACCACGCTACTCCCATTTGTACGCAACGACGCCCCCCGTCTTCCCCATTCCCCAAGTTCCGACCCTTCATCGTCAATTGACTGGCTCCCGCTCATTCGATCGATCAAAGCTCTATTTTTTTTCACTGTGATAGCTAAGCACCGTAATCATGTGGAATTCAATCATATTGTTG...

CDS

Download CDS FASTA

4467 bp · TkA03G611290|TK1151|CDS

ATGGGAAACAAGATCGCACGAACGACGCAAGCTTCGGCTACCGAGTATTACCTTCACGACTTACCATCTTCGTACAACTTGGTACTAAAAGAGGTGTTGGGAAGAGCACGGTTCCTGAAATCCATTCAGTGTAAGCATGACGAAGGATTGGTTTTAGTCAAGGTTTATTTCAAACGTGGTGACTCGATTGATCTTCGGGACTATGAGCGGCGATTGTCTCTGATTCGTGAGATCTTTAGCCGTATGGAGAATTCTCACGT...

Protein

Download Protein FASTA

1488 aa · TkA03G611290|TK1151|PROTEIN

MGNKIARTTQASATEYYLHDLPSSYNLVLKEVLGRARFLKSIQCKHDEGLVLVKVYFKRGDSIDLRDYERRLSLIREIFSRMENSHVWPFQFWLETDKAAYLLRQYFFNNLHDRLSTRPFLSLVEKKWLAFQLLYAVKQSHDYGVCHGDIKCENVLVTSWNWLYLADFASFKPTYIPHDDPSDFSFFFDTGGRRRCYLAPERFYEHGGEIQVSQDAPLRPSMDIFAVGCVIAELFLEGQPLFELSQLLAYRRGQFDPSQH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G611290
TK1151 IDTkA03G611290
OH-1004 IDLXL04_027923
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)98.900
Protein coverage (%)TK1151 100.000 / OH-1004 96.895
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G611290
LocationChr03:155230876-155238941 (+)
DescriptionSimilar to VPS15: Serine/threonine-protein kinase VPS15
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g29380 Serine/threonine-protein kinase required for cytoplasm to vacuole transport (Cvt) and autophagy as a part of the autophagy-specific VPS34 PI3-kinase complex I (By similarity).
Arabidopsis AtVPS15 is essential for pollen development and germination through modulating phosphatidylinositol 3-phosphate formation.2011 · DOI: 10.1007/s11103-011-9806-9
Arabidopsis AtVPS15 plays essential roles in pollen germination possibly by interacting with AtVPS34.2012 · DOI: 10.1016/j.jgg.2012.01.002

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_027923 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000011 vacuole inheritance Biological Process
GO:0000425 pexophagy Biological Process
GO:0006623 protein targeting to vacuole Biological Process
GO:0006914 autophagy Biological Process
GO:0009555 pollen development Biological Process
GO:0009846 pollen germination Biological Process
GO:0016236 macroautophagy Biological Process
GO:0023052 signaling Biological Process
GO:0032968 positive regulation of transcription elongation by RNA polymerase II Biological Process
GO:0042147 retrograde transport, endosome to Golgi Biological Process
GO:0045053 protein retention in Golgi apparatus Biological Process
GO:0045324 late endosome to vacuole transport Biological Process
KEGG gene cross-reference
ath:AT4G29380
sce:YBR097W
spo:2539996
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.484
Rank 1 · TkA03G611290 · TK1151
Nucleus0.251
Rank 2 · TkA03G611290 · TK1151
Golgi apparatus0.192
Rank 3 · TkA03G611290 · TK1151
Lysosome / Vacuole0.132
Rank 4 · TkA03G611290 · TK1151
Cell membrane0.106
Rank 5 · TkA03G611290 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase30-293 aa
PF07714PK_Tyr_Ser-Thr33-287 aa
PF01636APH118-161 aa
PF19974TCAD9132-174 aa
PF19974TCAD9391-448 aa
PF12460MMS19_C392-483 aa
PF23271HEAT_GCN1445-517 aa
PF22956PIK3R4-like_middle452-811 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G611290PF00069Pkinase302931.4e-1868.0
TkA03G611290PF07714PK_Tyr_Ser-Thr332870.001818.4
TkA03G611290PF01636APH1181610.1412.6
TkA03G611290PF19974TCAD91321740.01415.3
TkA03G611290PF19974TCAD93914480.01415.3
TkA03G611290PF12460MMS19_C3924833.17.4
TkA03G611290PF23271HEAT_GCN14455170.007217.2
TkA03G611290PF22956PIK3R4-like_middle4528116.7e-123410.7
TkA03G611290PF02985HEAT4564827.2e-0935.8
TkA03G611290PF29896PPFR1_M4645220.0004721.3
TkA03G611290PF01602Adaptin_N4645230.06312.6
TkA03G611290PF30359RELCH_C4645180.3110.9
TkA03G611290PF13646HEAT_24665170.0003921.4
TkA03G611290PF13513HEAT_EZ4665150.002319.1
TkA03G611290PF12717Cnd14665190.05714.2
TkA03G611290PF22646PPP2R1A-like_HEAT4675150.02815.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M0E5Arabidopsis thalianasp|Q9M0E5|VPS15_ARATH Serine/threonine-protein kinase VPS1565.700%Swiss-ProtHigh

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