RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G569950
Reference: TK1151 Chr: Chr03 Coordinates: 144553115-144566038 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1446 bp · TkA03G569950|TK1151|cDNA

ATGAAAGGCCGAAGCCAAAATTCGGATAGAATCAGCGGACTTCCTCAATATATAATTGATAAAATTCTAACTCTTATACCAATTCGAGATGCATTAAGAACAAGCATTTTATCAAAGAAATGGAGGTATTCTTGGACGACCATGCCGAAACTTGCATTTAATGACCAGATGCAAGTATCATCCGGTGACAAAGAACTCAACAAATATAACAAGATGGTTCTTGGAATCCTTACCAATTGCCCCCTACTTGAGGACTTTAT...

CDS

Download CDS FASTA

1446 bp · TkA03G569950|TK1151|CDS

ATGAAAGGCCGAAGCCAAAATTCGGATAGAATCAGCGGACTTCCTCAATATATAATTGATAAAATTCTAACTCTTATACCAATTCGAGATGCATTAAGAACAAGCATTTTATCAAAGAAATGGAGGTATTCTTGGACGACCATGCCGAAACTTGCATTTAATGACCAGATGCAAGTATCATCCGGTGACAAAGAACTCAACAAATATAACAAGATGGTTCTTGGAATCCTTACCAATTGCCCCCTACTTGAGGACTTTAT...

Protein

Download Protein FASTA

482 aa · TkA03G569950|TK1151|PROTEIN

MKGRSQNSDRISGLPQYIIDKILTLIPIRDALRTSILSKKWRYSWTTMPKLAFNDQMQVSSGDKELNKYNKMVLGILTNCPLLEDFIWIKEEIELELTDCELVELFKCLPSVQILLIMKLKIKHLDAGGMPHKLPISLPHLRRLVLSVCFLELSTVLCVINNSPNLEKIDIEMCWDHDQCLQHTFENLCDDEDYSGLKLDHLRELDISSFHNYDPEMEFVKLIMAKSPVLKKARIELNADVSIDEENKMLQKLMKGKHKS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA03G569950
TK1151 IDTkA03G569950
OH-1004 IDLXL04_011168
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)50.400
Protein coverage (%)TK1151 100.000 / OH-1004 49.502
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G569950
LocationChr03:144553115-144566038 (+)
DescriptionSimilar to At1g13570: F-box/FBD/LRR-repeat protein At1g13570
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g13570 F-box/FBD/LRR-repeat protein At1g13570. No verified direct reference in this release
At5g56370 FBD-associated F-box protein At5g56370. No verified direct reference in this release
At5g56420 F-box/FBD/LRR-repeat protein At5g56420. No verified direct reference in this release
At4g10400 FBD-associated F-box protein At4g10400. No verified direct reference in this release
At4g09920 F-box protein At4g09920. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_011168 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005634 nucleus Cellular Component
KEGG gene cross-reference
ath:AT1G13570
ath:AT5G56440
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.644
Rank 1 · TkA03G569950 · TK1151
Nucleus0.477
Rank 2 · TkA03G569950 · TK1151
Endoplasmic reticulum0.066
Rank 3 · TkA03G569950 · TK1151
Cell membrane0.058
Rank 4 · TkA03G569950 · TK1151
Mitochondrion0.030
Rank 5 · TkA03G569950 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646F-box11-49 aa
PF12937F-box-like11-42 aa
PF07723LRR_276-81 aa
PF13516LRR_694-101 aa
PF12799LRR_498-115 aa
PF00646F-box102-115 aa
PF24758LRR_At5g56370109-181 aa
PF13516LRR_6138-147 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G569950PF00646F-box11492.5e-1453.2
TkA03G569950PF12937F-box-like11420.000122.7
TkA03G569950PF07723LRR_276810.0009220.5
TkA03G569950PF13516LRR_6941010.1313.1
TkA03G569950PF12799LRR_4981158.47.5
TkA03G569950PF00646F-box1021152.5e-1453.2
TkA03G569950PF24758LRR_At5g563701091811.7e-1351.5
TkA03G569950PF13516LRR_61381470.1313.1
TkA03G569950PF23622LRR_At1g61320_AtMIF11392402.8e-0731.0
TkA03G569950PF12799LRR_41391728.47.5
TkA03G569950PF08387FBD1581698.8e-0626.2
TkA03G569950PF13516LRR_61631740.1313.1
TkA03G569950PF24758LRR_At5g563701912371.7e-1351.5
TkA03G569950PF12799LRR_41942098.47.5
TkA03G569950PF08387FBD2002358.8e-0626.2
TkA03G569950PF13516LRR_62012090.1313.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FZ70Arabidopsis thalianasp|Q9FZ70|FDL1_ARATH F-box/FBD/LRR-repeat protein At1g1357040.400%Swiss-ProtLow
Q9FM94Arabidopsis thalianasp|Q9FM94|FBD21_ARATH FBD-associated F-box protein At5g5637034.000%Swiss-ProtLow
Q9FM89Arabidopsis thalianasp|Q9FM89|FDL38_ARATH F-box/FBD/LRR-repeat protein At5g5642029.000%Swiss-ProtLow
Q9SV82Arabidopsis thalianasp|Q9SV82|FBD40_ARATH FBD-associated F-box protein At4g1040028.700%Swiss-ProtLow
Q9T0F1Arabidopsis thalianasp|Q9T0F1|FB226_ARATH F-box protein At4g0992028.900%Swiss-ProtLow

JBrowse

View in Genome Browser