LXL04_011168 | RubberDandelionOmics

Gene overview

LXL04_011168

Reference: OH-1004 Chr: Chr02 Coordinates: 159293995-159306110 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3621 bp · LXL04_011168|LXL04_011168|OH1004|cDNA

ATGAACGGTCGACACCAAAAATCAGATCGAATCAGCGCTCTTCCTCAGGACACAATTGAAAAAATCCTGACTCTGATGCCTATCCGAGATGCAACGAGGACGAGTATTTTGTCAAGGAAATGGAGGTATTCTTGGACAACCATGCCCAAACTTGTATTTAACGACACCATGGTTGTATCATCTGGTAACAGAAAACTCGATAGATATAAGTTTGTGAATGGCATCTTGCAAGTTTTGTTGCTACACAGGGGTCCGATATT...

CDS

Download CDS FASTA

3621 bp · LXL04_011168|LXL04_011168|OH1004|CDS

ATGAACGGTCGACACCAAAAATCAGATCGAATCAGCGCTCTTCCTCAGGACACAATTGAAAAAATCCTGACTCTGATGCCTATCCGAGATGCAACGAGGACGAGTATTTTGTCAAGGAAATGGAGGTATTCTTGGACAACCATGCCCAAACTTGTATTTAACGACACCATGGTTGTATCATCTGGTAACAGAAAACTCGATAGATATAAGTTTGTGAATGGCATCTTGCAAGTTTTGTTGCTACACAGGGGTCCGATATT...

Protein

Download Protein FASTA

1206 aa · LXL04_011168|LXL04_011168|OH1004|PROTEIN

MNGRHQKSDRISALPQDTIEKILTLMPIRDATRTSILSRKWRYSWTTMPKLVFNDTMVVSSGNRKLDRYKFVNGILQVLLLHRGPILELINLSVYNNFREIDQIILHLSRSNNIKKFTLNIRRTDSIYVLPCALSSLQQLEHLDLSNCKIELPLMNKGFNRLKSLTVCKVNISQGFLTNCPLLEKFTWIRVFDDIKLTEREFVSLFKSLPSIQFVHISRLCIEHLAAGSMPHKPPVTLPHLRTLVLSLCFLELSSAVWVI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_011168`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_011168

Location Chr02:159293995-159306110 (+)

Description Similar to At1g13570: F-box/FBD/LRR-repeat protein At1g13570

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g13570`	F-box/FBD/LRR-repeat protein At1g13570.	No verified direct reference in this release
`At5g56440`	Putative FBD-associated F-box protein At5g56440.	No verified direct reference in this release
`At5g56370`	FBD-associated F-box protein At5g56370.	No verified direct reference in this release
`At1g55030`	Putative FBD-associated F-box protein At1g55030.	No verified direct reference in this release
`At4g10400`	FBD-associated F-box protein At4g10400.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011168 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT1G13570

ath:AT5G56440

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.537

Rank 1 · LXL04_011168 · OH-1004

Nucleus0.523

Rank 2 · LXL04_011168 · OH-1004

Cell membrane0.082

Rank 3 · LXL04_011168 · OH-1004

Endoplasmic reticulum0.050

Rank 4 · LXL04_011168 · OH-1004

Mitochondrion0.031

Rank 5 · LXL04_011168 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646.39F-box11-50 aa

PF24758.2LRR_At5g56370106-189 aa

PF08387.16FBD300-336 aa

PF00646.39F-box376-414 aa

PF08387.16FBD675-711 aa

PF23622.2LRR_At1g61320_AtMIF1902-957 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_011168	`PF00646.39`	F-box	11	50	1.6e-16	60.2
LXL04_011168	`PF24758.2`	LRR_At5g56370	106	189	2.4e-20	73.9
LXL04_011168	`PF08387.16`	FBD	300	336	8.8e-17	61.4
LXL04_011168	`PF00646.39`	F-box	376	414	1.6e-16	60.2
LXL04_011168	`PF08387.16`	FBD	675	711	8.8e-17	61.4
LXL04_011168	`PF23622.2`	LRR_At1g61320_AtMIF1	902	957	3.9e-12	47.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FZ70`	Arabidopsis thaliana	F-box/FBD/LRR-repeat protein At1g13570	28.535%	Swiss-Prot	weak database homology
`Q9FM87`	Arabidopsis thaliana	Putative FBD-associated F-box protein At5g56440	33.166%	Swiss-Prot	weak database homology
`Q9FM94`	Arabidopsis thaliana	FBD-associated F-box protein At5g56370	24.929%	Swiss-Prot	weak database homology
`Q9C7M1`	Arabidopsis thaliana	Putative FBD-associated F-box protein At1g55030	29.381%	Swiss-Prot	weak database homology
`Q9SV82`	Arabidopsis thaliana	FBD-associated F-box protein At4g10400	27.526%	Swiss-Prot	weak database homology

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