TkA03G522080 | RubberDandelionOmics

Gene overview

TkA03G522080

Reference: TK1151 Chr: Chr03 Coordinates: 131002908-131004265 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

867 bp · TkA03G522080|TK1151|cDNA

GCAGATCTGATGGCGGCCAATAAAACCCTTCTTTCCTCCCTCCATCCCCTCCGCTCTGCTTCTTTTCCCACCATCTCCACCGCCGGTCATTCTCAGCAGCAATGGCTTCAGAGAGGAAGCAAGCGAATCCAATGAGAGAGATCAAGGTTCAGAAACTCGTCCTCAACATCTCCGTCGGCGAGAGCGGAGATCGTCTCACTCGCGCTGCCAAGGTGTTGGAGCAACTCAGTGGCCAGTCCCCCGTCTTTTCCAAGGCAAGG...

CDS

Download CDS FASTA

549 bp · TkA03G522080|TK1151|CDS

ATGGCTTCAGAGAGGAAGCAAGCGAATCCAATGAGAGAGATCAAGGTTCAGAAACTCGTCCTCAACATCTCCGTCGGCGAGAGCGGAGATCGTCTCACTCGCGCTGCCAAGGTGTTGGAGCAACTCAGTGGCCAGTCCCCCGTCTTTTCCAAGGCAAGGTACACAGTGAGGTCATTTGGAATTAGGCGTAATGAGAAGATTGCATGCTACGTAACTGTTAGAGGAGACAAAGCAATGCAGCTTTTAGAGAGTGGATTGAA...

Protein

Download Protein FASTA

182 aa · TkA03G522080|TK1151|PROTEIN

MASERKQANPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQQIGG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G522080`
TK1151 ID	TkA03G522080
OH-1004 ID	LXL04_009759
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G522080

Location Chr03:131002908-131004265 (+)

Description Similar to RPL11: 60S ribosomal protein L11

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g42740`	Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell.	No verified direct reference in this release
`UniProt: P42794`	Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2YDY2`	Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell.	No verified direct reference in this release
`Os05g0207300`	Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009759 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006412 translation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005840 ribosome Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009536 plastid Cellular Component

GO:0015934 large ribosomal subunit Cellular Component

GO:0022625 cytosolic large ribosomal subunit Cellular Component

GO:0022626 cytosolic ribosome Cellular Component

KEGG gene cross-reference

ath:AT2G42740

ath:AT3G58700

ath:AT4G18730

ath:AT5G45775

dosa:Os05g0207300

dosa:Os06g0550000

osa:4341262

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.823

Rank 1 · TkA03G522080 · TK1151

Nucleus0.289

Rank 2 · TkA03G522080 · TK1151

Endoplasmic reticulum0.172

Rank 3 · TkA03G522080 · TK1151

Mitochondrion0.050

Rank 4 · TkA03G522080 · TK1151

Cell membrane0.033

Rank 5 · TkA03G522080 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00281Ribosomal_L59-62 aa

PF00673Ribosomal_L5_C66-164 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G522080	`PF00281`	Ribosomal_L5	9	62	2.9e-21	76.2
TkA03G522080	`PF00673`	Ribosomal_L5_C	66	164	2.3e-18	66.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P42795`	Arabidopsis thaliana	sp\|P42795\|RL111_ARATH Large ribosomal subunit protein uL5z	94.000%	Swiss-Prot	High
`P42794`	Arabidopsis thaliana	sp\|P42794\|RL112_ARATH Large ribosomal subunit protein uL5y/uL5x/uL5w	93.400%	Swiss-Prot	High
`A2YDY2`	Oryza sativa subsp. indica	sp\|A2YDY2\|RL11_ORYSI Large ribosomal subunit protein uL5	93.800%	Swiss-Prot	High
`Q0DK10`	Oryza sativa subsp. japonica	sp\|Q0DK10\|RL11_ORYSJ Large ribosomal subunit protein uL5	93.800%	Swiss-Prot	High

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