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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G519550
Reference: TK1151 Chr: Chr03 Coordinates: 130348245-130349840 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1596 bp · TkA03G519550|TK1151|cDNA

ATGAAGATTGGGCAATTATCTTTACTGAAATCCTCAATTACCTCTTCAGGAGTCGCCTCAAATCCTAATCACTATTCAATTCCAACTGAGATTTCGAGTTATATTCTTCAACATCCACCAACTGCCACATCCCTCGCACCAGTCCTCCAATGGTACATCAATTCAGACACTCCTTCTCATGGCCAAAAGATTCATACCCATATAATCAAAACCGGGTACAGGCCCAACACAAACATATCCATCAAACTTCTCATTCTTTA...

CDS

Download CDS FASTA

1596 bp · TkA03G519550|TK1151|CDS

ATGAAGATTGGGCAATTATCTTTACTGAAATCCTCAATTACCTCTTCAGGAGTCGCCTCAAATCCTAATCACTATTCAATTCCAACTGAGATTTCGAGTTATATTCTTCAACATCCACCAACTGCCACATCCCTCGCACCAGTCCTCCAATGGTACATCAATTCAGACACTCCTTCTCATGGCCAAAAGATTCATACCCATATAATCAAAACCGGGTACAGGCCCAACACAAACATATCCATCAAACTTCTCATTCTTTA...

Protein

Download Protein FASTA

531 aa · TkA03G519550|TK1151|PROTEIN

MKIGQLSLLKSSITSSGVASNPNHYSIPTEISSYILQHPPTATSLAPVLQWYINSDTPSHGQKIHTHIIKTGYRPNTNISIKLLILYLKSSCLLYARQVFDDLRQPTLTAYNYIIAGYTKHGEVAESLNLVRRLVSCNEKPDGYTFSMILKASTNNTILPNGCRIGKEVHAQIMKSYVVVDDVLSTALVDLYVKSGRVDYARRVFDFMMEKDVICSTSMISGYMRQGLTEDAEYIFNKTTHKDIVVFNAMIEGYSKSIET...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G519550
TK1151 IDTkA03G519550
OH-1004 IDLXL04_010329
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.100
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G519550
LocationChr03:130348245-130349840 (-)
DescriptionSimilar to PCMP-E34: Pentatricopeptide repeat-containing protein At1g28690, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g28690 Pentatricopeptide repeat-containing protein At1g28690, mitochondrial. No verified direct reference in this release
At3g14330 Pentatricopeptide repeat-containing protein At3g14330. No verified direct reference in this release
At2g13600 Pentatricopeptide repeat-containing protein At2g13600. No verified direct reference in this release
At2g34400 Pentatricopeptide repeat-containing protein At2g34400. No verified direct reference in this release
At3g03580 Pentatricopeptide repeat-containing protein At3g03580. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010329 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0010182 sugar mediated signaling pathway Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G28690
ath:AT2G13600
ath:AT2G20540
ath:AT3G49142
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.641
Rank 1 · TkA03G519550 · TK1151
Plastid0.214
Rank 2 · TkA03G519550 · TK1151
Nucleus0.042
Rank 3 · TkA03G519550 · TK1151
Cytoplasm0.029
Rank 4 · TkA03G519550 · TK1151
Cell membrane0.005
Rank 5 · TkA03G519550 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17177PPR_long40-73 aa
PF29070MSC6_N47-123 aa
PF17049AEP162-105 aa
PF13812PPR_371-118 aa
PF01535PPR85-104 aa
PF22330Rib_mS39_PPR96-122 aa
PF12921ATP13101-137 aa
PF13041PPR_2106-152 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G519550PF17177PPR_long40736.9e-1452.4
TkA03G519550PF29070MSC6_N471231.9e-0627.9
TkA03G519550PF17049AEP1621053.1e-0730.5
TkA03G519550PF13812PPR_3711181.3e-1867.5
TkA03G519550PF01535PPR851041.3e-46154.3
TkA03G519550PF22330Rib_mS39_PPR961220.001119.5
TkA03G519550PF12921ATP131011370.005917.2
TkA03G519550PF13041PPR_21061522e-46156.6
TkA03G519550PF12854PPR_11061332.8e-36123.7
TkA03G519550PF01535PPR1101371.3e-46154.3
TkA03G519550PF23276TPR_241111546.5e-1452.7
TkA03G519550PF17177PPR_long1112136.9e-1452.4
TkA03G519550PF17049AEP11121413.1e-0730.5
TkA03G519550PF13428TPR_141161380.008417.4
TkA03G519550PF29070MSC6_N1172041.9e-0627.9
TkA03G519550PF13812PPR_31321561.3e-1867.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q1PFQ9Arabidopsis thalianasp|Q1PFQ9|PPR62_ARATH Pentatricopeptide repeat-containing protein At1g28690, mitochondrial55.000%Swiss-ProtHigh
Q9LUL5Arabidopsis thalianasp|Q9LUL5|PP229_ARATH Pentatricopeptide repeat-containing protein At3g1433028.900%Swiss-ProtLow
Q9SIT7Arabidopsis thalianasp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g1360034.600%Swiss-ProtMedium
O64705Arabidopsis thalianasp|O64705|PP184_ARATH Pentatricopeptide repeat-containing protein At2g3440026.000%Swiss-ProtLow
Q9SS60Arabidopsis thalianasp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g0358026.500%Swiss-ProtLow

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