Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1596 bp · LXL04_010329|LXL04_010329|OH1004|cDNA
ATGAAGATTGGGCAATTATCTTTACTGAAATCCTCAATTACCTCTTCAGGAGTCGCCTCAAATCCTAATCACTATTCAATTCCAACTGAGATTTCGAGTTATATTCTTCAACATGCACCAACTGCCACATCCCTCGCACCAGTCCTCCAATGGTACATCAATTCAGACACTCCTTCTCATGGCCAAAAGATTCATACCCATATAATCAAAACCGGGTACAGGCCCAACACAAACATATCCATCAAACTTCTCATTCTTTA...
1596 bp · LXL04_010329|LXL04_010329|OH1004|CDS
ATGAAGATTGGGCAATTATCTTTACTGAAATCCTCAATTACCTCTTCAGGAGTCGCCTCAAATCCTAATCACTATTCAATTCCAACTGAGATTTCGAGTTATATTCTTCAACATGCACCAACTGCCACATCCCTCGCACCAGTCCTCCAATGGTACATCAATTCAGACACTCCTTCTCATGGCCAAAAGATTCATACCCATATAATCAAAACCGGGTACAGGCCCAACACAAACATATCCATCAAACTTCTCATTCTTTA...
Protein
Download Protein FASTA531 aa · LXL04_010329|LXL04_010329|OH1004|PROTEIN
MKIGQLSLLKSSITSSGVASNPNHYSIPTEISSYILQHAPTATSLAPVLQWYINSDTPSHGQKIHTHIIKTGYRPNTNISIKLLILYLKSSCLLYARQVFDDLRQPTLTAYNYIIAGYTKHGQVAESLNLVRRLVSCNEKPDGYTFSMILKASTNNTILPNGCRIGKEVHAQIMKSYVVVDDVLSTALVDLYVKSGRVDYARKVFNFMMEKDVICSTSMISGYMRQGLTEDAEYIFNKTTHKDIVVFNAMIEGYSKSIET...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_010329 |
|---|---|
| TK1151 ID | TkA03G519550 |
| OH-1004 ID | LXL04_010329 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.100 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_010329 | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr02:144314429-144316024 (-) | ||||||||||||||||||
| Description | Similar to PCMP-E34: Pentatricopeptide repeat-containing protein At1g28690, mitochondrial | ||||||||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | ||||||||||||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||||||||
| GO annotations (OH1004 source) | GO:0009451 RNA modification Biological Process GO:0010182 sugar mediated signaling pathway Biological Process GO:0080156 mitochondrial mRNA modification Biological Process GO:0005739 mitochondrion Cellular Component GO:0009507 chloroplast Cellular Component GO:0003723 RNA binding Molecular Function GO:0008270 zinc ion binding Molecular Function | ||||||||||||||||||
| KEGG gene cross-reference | ath:AT1G28690 ath:AT2G13600 ath:AT2G20540 ath:AT3G49142 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF13041.13PPR_2106-152 aaPF13041.13PPR_2242-290 aaPF17177.11PPR_long256-346 aaPF13041.13PPR_2344-393 aaPF12854.14PPR_1345-373 aaPF01535.27PPR347-373 aaPF17177.11PPR_long357-505 aaPF01535.27PPR383-410 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_010329 | PF13041.13 | PPR_2 | 106 | 152 | 6.2e-47 | 158.2 |
| LXL04_010329 | PF13041.13 | PPR_2 | 242 | 290 | 6.2e-47 | 158.2 |
| LXL04_010329 | PF17177.11 | PPR_long | 256 | 346 | 3.7e-14 | 53.3 |
| LXL04_010329 | PF13041.13 | PPR_2 | 344 | 393 | 6.2e-47 | 158.2 |
| LXL04_010329 | PF12854.14 | PPR_1 | 345 | 373 | 9.5e-36 | 121.9 |
| LXL04_010329 | PF01535.27 | PPR | 347 | 373 | 4.6e-47 | 155.7 |
| LXL04_010329 | PF17177.11 | PPR_long | 357 | 505 | 3.7e-14 | 53.3 |
| LXL04_010329 | PF01535.27 | PPR | 383 | 410 | 4.6e-47 | 155.7 |
| LXL04_010329 | PF20431.5 | E_motif | 463 | 525 | 5.6e-13 | 49.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
| Protein | Organism | Description | Identity | Database | Confidence |
|---|---|---|---|---|---|
Q1PFQ9 | Arabidopsis thaliana | Pentatricopeptide repeat-containing protein At1g28690, mitochondrial | 59.649% | Swiss-Prot | strong database homology |
Q9SIT7 | Arabidopsis thaliana | Pentatricopeptide repeat-containing protein At2g13600 | 33.538% | Swiss-Prot | moderate database homology |
P0C899 | Arabidopsis thaliana | Putative pentatricopeptide repeat-containing protein At3g49142 | 33.397% | Swiss-Prot | moderate database homology |
Q9SIL5 | Arabidopsis thaliana | Pentatricopeptide repeat-containing protein At2g20540 | 35.054% | Swiss-Prot | moderate database homology |
Q9FFG8 | Arabidopsis thaliana | Pentatricopeptide repeat-containing protein At5g44230 | 35.789% | Swiss-Prot | moderate database homology |