TkA03G518510 | RubberDandelionOmics

Gene overview

TkA03G518510

Reference: TK1151 Chr: Chr03 Coordinates: 130106199-130111430 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2580 bp · TkA03G518510|TK1151|cDNA

CATCCGACCCGACCCGGCACAACTTTGCAACTAAAATAATACCTTGTCGACCAAATTTACCTTTAAATGCTTATTCAAAATAGCAAAAATATTAAAAAACTGTTTTGTTGAAAAAGGTTCGTCGCCGACACCAGCACATGGTGTCCAAATTTCAAAACCACCACCTTGTTTCGTAATTCCACTACAATTATGCCTTTAAGTACAGTTAAAACCTCACTTGTTAAAATAATCTCAATTGACAAAGATCTTTCTGTTTGTTA...

CDS

Download CDS FASTA

1065 bp · TkA03G518510|TK1151|CDS

ATGGAAGCTGATTATGAAGTTGGCGCGAAGGCGGAGCCGACAACCACCATGCCGTCATCCACCGGAACCCTCGGGGCACATCTGGCTCGCCGTTTAGTTCAGATTGGTGTGAAAGACGTGTTCTCTGTTCCCGGCGACTTTAACTTGACCTTACTTGACTACTTGGTCGCGGAGCCGGGTCTCAACCTCGTTGGCTGCTGCAACGAGCTAAACGCCGGGTATGCGGCTGATGGATACGCGCGAGCTAAGGGAGTCGGTGC...

Protein

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354 aa · TkA03G518510|TK1151|PROTEIN

MEADYEVGAKAEPTTTMPSSTGTLGAHLARRLVQIGVKDVFSVPGDFNLTLLDYLVAEPGLNLVGCCNELNAGYAADGYARAKGVGACVVTFTVGGLSVLNAIAGACSESLPVICIVGGPNSNDYGTNRILHHTIGVPDFTQESQCFQTVTCAQAVVNNLEDAHEQIDTAITTALKESKPVYISISCNLPGIPHPTFTKEPVPFFLPPFSSNPLGLEAAVEETAKFLNKAVKPVIVAGCKLRVAKAQKAFMEFADASGYP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G518510`
TK1151 ID	TkA03G518510
OH-1004 ID	LXL04_010311
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	98.600
Protein coverage (%)	TK1151 99.153 / OH-1004 58.598 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G518510

Location Chr03:130106199-130111430 (+)

Description Similar to PDC1: Pyruvate decarboxylase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g01320`	Pyruvate decarboxylase 4.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0293500`	Pyruvate decarboxylase 2.	No verified direct reference in this release
`UniProt: A2XFI3`	Pyruvate decarboxylase 2.	No verified direct reference in this release
`UniProt: A2Y5L9`	Pyruvate decarboxylase 1.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010311 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000949 aromatic amino acid family catabolic process to alcohol via Ehrlich pathway Biological Process

GO:0006950 response to stress Biological Process

GO:0036293 response to decreased oxygen levels Biological Process

GO:0005829 cytosol Cellular Component

GO:0000287 magnesium ion binding Molecular Function

GO:0004737 pyruvate decarboxylase activity Molecular Function

GO:0030976 thiamine pyrophosphate binding Molecular Function

KEGG gene cross-reference

dosa:Os03g0293500

dosa:Os05g0469600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.687

Rank 1 · TkA03G518510 · TK1151

Nucleus0.272

Rank 2 · TkA03G518510 · TK1151

Peroxisome0.083

Rank 3 · TkA03G518510 · TK1151

Mitochondrion0.080

Rank 4 · TkA03G518510 · TK1151

Cell membrane0.054

Rank 5 · TkA03G518510 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02776TPP_enzyme_N23-128 aa

PF09353DUF1995159-314 aa

PF00205TPP_enzyme_M220-337 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G518510	`PF02776`	TPP_enzyme_N	23	128	9.9e-30	103.5
TkA03G518510	`PF09353`	DUF1995	159	314	0.09	13.5
TkA03G518510	`PF00205`	TPP_enzyme_M	220	337	7.8e-25	87.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M040`	Arabidopsis thaliana	sp\|Q9M040\|PDC4_ARATH Pyruvate decarboxylase 4	77.300%	Swiss-Prot	High
`Q10MW3`	Oryza sativa subsp. japonica	sp\|Q10MW3\|PDC2_ORYSJ Pyruvate decarboxylase 2	78.000%	Swiss-Prot	High
`A2XFI3`	Oryza sativa subsp. indica	sp\|A2XFI3\|PDC2_ORYSI Pyruvate decarboxylase 2	78.000%	Swiss-Prot	High
`A2Y5L9`	Oryza sativa subsp. indica	sp\|A2Y5L9\|PDC1_ORYSI Pyruvate decarboxylase 1	76.900%	Swiss-Prot	High

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