Gene Card
Gene overview
cDNA / CDS / Protein Sequences
687 bp · TkA03G515840|TK1151|cDNA
ATGGATAACCAAAAAGAAATCTTTTCGAGTGAGGAGCATGTCGCAAAAGCTAAACCTGAGAAAAACAAATCTCCACAAAAACTCACCAAAGTGGACAAGAAAAAGGCAATCCATGAGAATCAGAAGTTGAAAAATGATGTTGACCTTGATGACAATGACTTGCTTAATAAAATAATCGGTTCCGATGGAAAGAGCACGGATGAGGACGACTCTCAAGACAACTCTGAGTACATATCCGTAGATGTCGATCTGCTTCACGA...
687 bp · TkA03G515840|TK1151|CDS
ATGGATAACCAAAAAGAAATCTTTTCGAGTGAGGAGCATGTCGCAAAAGCTAAACCTGAGAAAAACAAATCTCCACAAAAACTCACCAAAGTGGACAAGAAAAAGGCAATCCATGAGAATCAGAAGTTGAAAAATGATGTTGACCTTGATGACAATGACTTGCTTAATAAAATAATCGGTTCCGATGGAAAGAGCACGGATGAGGACGACTCTCAAGACAACTCTGAGTACATATCCGTAGATGTCGATCTGCTTCACGA...
Protein
Download Protein FASTA228 aa · TkA03G515840|TK1151|PROTEIN
MDNQKEIFSSEEHVAKAKPEKNKSPQKLTKVDKKKAIHENQKLKNDVDLDDNDLLNKIIGSDGKSTDEDDSQDNSEYISVDVDLLHELLDCPLCKEIAKKVKAIKYCLHRFCGECIDKWLENGNTECPTCKTDFVSQKALVRDHNRDKLVAVCFPDREEHEAQDEDTQLMSDKSLESLDKKPEDGDTSTPFVPSEEMLDRVSKQVADRISKYKRKHQQLPAIDEKKES
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA03G515840 |
|---|---|
| TK1151 ID | TkA03G515840 |
| OH-1004 ID | LXL04_010258 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.600 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA03G515840 |
|---|---|
| Location | Chr03:129390594-129405540 (+) |
| Description | Similar to Ring1: E3 ubiquitin-protein ligase RING1 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006325 chromatin organization Biological Process GO:0006338 chromatin remodeling Biological Process GO:0006351 DNA-templated transcription Biological Process GO:0006357 regulation of transcription by RNA polymerase II Biological Process GO:0009948 anterior/posterior axis specification Biological Process GO:0009952 anterior/posterior pattern specification Biological Process GO:0010467 gene expression Biological Process GO:0016567 protein ubiquitination Biological Process GO:0031507 heterochromatin formation Biological Process GO:0045892 negative regulation of DNA-templated transcription Biological Process GO:0045893 positive regulation of DNA-templated transcription Biological Process GO:0051321 meiotic cell cycle Biological Process |
| KEGG gene cross-reference | cfa:607905 dme:Dmel_CG5595 hsa:6015 mmu:19763 rno:309626 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF18112Zn-C2H2_1211-13 aaPF14353CpXC30-59 aaPF03966Trm112p84-95 aaPF14835zf-RING_685-134 aaPF05290Baculo_IE-186-140 aaPF11789zf-Nse89-130 aaPF22191IBR_189-120 aaPF13639zf-RING_290-131 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA03G515840 | PF18112 | Zn-C2H2_12 | 11 | 13 | 3.0 | 9.0 |
| TkA03G515840 | PF14353 | CpXC | 30 | 59 | 0.006 | 17.4 |
| TkA03G515840 | PF03966 | Trm112p | 84 | 95 | 0.37 | 11.5 |
| TkA03G515840 | PF14835 | zf-RING_6 | 85 | 134 | 0.00064 | 20.3 |
| TkA03G515840 | PF05290 | Baculo_IE-1 | 86 | 140 | 0.038 | 14.7 |
| TkA03G515840 | PF11789 | zf-Nse | 89 | 130 | 0.27 | 11.8 |
| TkA03G515840 | PF22191 | IBR_1 | 89 | 120 | 3.7 | 8.2 |
| TkA03G515840 | PF13639 | zf-RING_2 | 90 | 131 | 6.4e-09 | 36.6 |
| TkA03G515840 | PF13920 | zf-C3HC4_3 | 90 | 133 | 5.2e-05 | 23.7 |
| TkA03G515840 | PF14570 | zf-RING_4 | 90 | 96 | 0.0048 | 17.4 |
| TkA03G515840 | PF14634 | zf-RING_5 | 90 | 95 | 0.017 | 15.8 |
| TkA03G515840 | PF17120 | zf-RING_16 | 90 | 129 | 0.056 | 13.8 |
| TkA03G515840 | PF21276 | ZNF512_C2HC | 90 | 101 | 0.18 | 12.2 |
| TkA03G515840 | PF04423 | Rad50_zn_hook | 90 | 95 | 0.82 | 10.3 |
| TkA03G515840 | PF00097 | zf-C3HC4 | 91 | 130 | 4.1e-11 | 43.3 |
| TkA03G515840 | PF13923 | zf-C3HC4_2 | 91 | 130 | 1.1e-10 | 41.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.