TkA03G500830 | RubberDandelionOmics

Gene overview

TkA03G500830

Reference: TK1151 Chr: Chr03 Coordinates: 125740537-125742065 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

942 bp · TkA03G500830|TK1151|cDNA

ATGGGAAGAACACCTTGCTGTGAAAAGAATGGTGGTTTGAGGAAAGGTCCATGGACTACTGAAGAAGATCAAAAACTCATTGATTACATTCACAAGAATGGCTATGGAAATTGGAGAACGCTACCCAAGAATGCTGGTTTGCAAAGATGTGGAAAAAGTTGTAGGTTAAGATGGACGAATTATCTTAAGCCTGATATTAAAAGAGGCAAGTTTTCTACCGAGGAGGAAGAAACAATCATTCAACTTCATAGTGTCTTGGG...

CDS

Download CDS FASTA

942 bp · TkA03G500830|TK1151|CDS

ATGGGAAGAACACCTTGCTGTGAAAAGAATGGTGGTTTGAGGAAAGGTCCATGGACTACTGAAGAAGATCAAAAACTCATTGATTACATTCACAAGAATGGCTATGGAAATTGGAGAACGCTACCCAAGAATGCTGGTTTGCAAAGATGTGGAAAAAGTTGTAGGTTAAGATGGACGAATTATCTTAAGCCTGATATTAAAAGAGGCAAGTTTTCTACCGAGGAGGAAGAAACAATCATTCAACTTCATAGTGTCTTGGG...

Protein

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313 aa · TkA03G500830|TK1151|PROTEIN

MGRTPCCEKNGGLRKGPWTTEEDQKLIDYIHKNGYGNWRTLPKNAGLQRCGKSCRLRWTNYLKPDIKRGKFSTEEEETIIQLHSVLGNKWSTIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPITHNTRLDILALSSIMINSPDLYNSTMVNPELLRLMASISSQGNQNPYFIHQNPQKHILENTLQAQENHYLLQDQTLIQEISNCASLSTPTFVVPSSSETSKLMQPNVNQFPSSVSEYDNCNYHINPQSSVTSTFL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G500830`
TK1151 ID	TkA03G500830
OH-1004 ID	LXL04_010125
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	92.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G500830

Location Chr03:125740537-125742065 (-)

Description Similar to MYB102: Transcription factor MYB102

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g21440`	Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable).	Integration of wounding and osmotic stress signals determines the expression of the AtMYB102 transcription factor gene.2003 · DOI: 10.1104/pp.102.019273 The Arabidopsis thaliana Transcription Factor AtMYB102 Functions in Defense Against the Insect Herbivore Pieris rapae.2006 · DOI: 10.4161/psb.1.6.3512
`At4g05100`	Probable transcription factor that may function in salt stress response.	Salt-induced transcription factor MYB74 is regulated by the RNA-directed DNA methylation pathway in Arabidopsis.2015 · DOI: 10.1093/jxb/erv312
`At4g28110`	Transcription factor involved in salt stress response.	AtMyb41 regulates transcriptional and metabolic responses to osmotic stress in Arabidopsis.2009 · DOI: 10.1104/pp.108.134874 Phosphorylation by AtMPK6 is required for the biological function of AtMYB41 in Arabidopsis.2012 · DOI: 10.1016/j.bbrc.2012.04.137 AtMYB41 activates ectopic suberin synthesis and assembly in multiple plant species and cell types.2014 · DOI: 10.1111/tpj.12624
`At1g34670`	Transcription factor that acts as a negative regulator of lateral root (LR) development.	AtMYB93 is a novel negative regulator of lateral root development in Arabidopsis.2014 · DOI: 10.1111/nph.12879
`At4g17785`	Transcription factor MYB39.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010125 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006952 defense response Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0009611 response to wounding Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009825 multidimensional cell growth Biological Process

GO:0010143 cutin biosynthetic process Biological Process

GO:0010345 suberin biosynthetic process Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0071365 cellular response to auxin stimulus Biological Process

KEGG gene cross-reference

ath:AT1G34670

ath:AT4G05100

ath:AT4G17785

ath:AT4G21440

ath:AT4G28110

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.807

Rank 1 · TkA03G500830 · TK1151

Cytoplasm0.296

Rank 2 · TkA03G500830 · TK1151

Mitochondrion0.025

Rank 3 · TkA03G500830 · TK1151

Cell membrane0.020

Rank 4 · TkA03G500830 · TK1151

Lysosome / Vacuole0.013

Rank 5 · TkA03G500830 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00249Myb_DNA-binding15-62 aa

PF15963Myb_DNA-bind_716-34 aa

PF13921Myb_DNA-bind_618-78 aa

PF23588HTH_CHD1_Hrp318-44 aa

PF20842Rax2_242-67 aa

PF15963Myb_DNA-bind_767-133 aa

PF00249Myb_DNA-binding68-112 aa

PF13921Myb_DNA-bind_671-115 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G500830	`PF00249`	Myb_DNA-binding	15	62	2.2e-36	124.5
TkA03G500830	`PF15963`	Myb_DNA-bind_7	16	34	0.011	16.2
TkA03G500830	`PF13921`	Myb_DNA-bind_6	18	78	1e-22	80.8
TkA03G500830	`PF23588`	HTH_CHD1_Hrp3	18	44	0.011	16.4
TkA03G500830	`PF20842`	Rax2_2	42	67	0.11	13.3
TkA03G500830	`PF15963`	Myb_DNA-bind_7	67	133	0.011	16.2
TkA03G500830	`PF00249`	Myb_DNA-binding	68	112	2.2e-36	124.5
TkA03G500830	`PF13921`	Myb_DNA-bind_6	71	115	1e-22	80.8
TkA03G500830	`PF20842`	Rax2_2	151	184	0.11	13.3
TkA03G500830	`PF20842`	Rax2_2	272	296	0.11	13.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LDR8`	Arabidopsis thaliana	sp\|Q9LDR8\|MY102_ARATH Transcription factor MYB102	48.800%	Swiss-Prot	Medium
`Q9M0Y5`	Arabidopsis thaliana	sp\|Q9M0Y5\|MYB74_ARATH Transcription factor MYB74	67.400%	Swiss-Prot	Medium
`Q9M0J5`	Arabidopsis thaliana	sp\|Q9M0J5\|MYB41_ARATH Transcription factor MYB41	69.100%	Swiss-Prot	Medium
`Q9S9Z2`	Arabidopsis thaliana	sp\|Q9S9Z2\|MYB93_ARATH Transcription factor MYB93	68.600%	Swiss-Prot	Low
`Q8GWP0`	Arabidopsis thaliana	sp\|Q8GWP0\|MYB39_ARATH Transcription factor MYB39	62.500%	Swiss-Prot	Low

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