TkA03G479910 | RubberDandelionOmics

Gene overview

TkA03G479910

Reference: TK1151 Chr: Chr03 Coordinates: 120011618-120015122 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1675 bp · TkA03G479910|TK1151|cDNA

GAACGCGCGAATAGAAGAACCATCAAGCGCGCACACACACACTTTACTTCTACTTTCTCTCTCCAACTACAAGTCTTTGATCCTTTTGCCCTGTTTTTCTCTCCGCAATTGGATTTTGATACATGATCGAATTCAATTTCGCCTAAAACTGGCTTTATTGTTTCGTTTTGGTGCTTACATGTTCTAGGGTTTTGATTCGATTTGATCACTAAGTGCGAGAATGGAAGTTGCAATTGAGGGTTTGGATTCTGATGTTTCTA...

CDS

Download CDS FASTA

1392 bp · TkA03G479910|TK1151|CDS

ATGGAAGTTGCAATTGAGGGTTTGGATTCTGATGTTTCTATTCTGAAGAAAGTTAAACATGAGGAGGAAGTCTTGAATCCTACTAGTGAAGGTGGATCATCAGTATCACTAAGTTCAGGGAACATCAATTCAGACACATCATACCATGATGATGACAATGATGGTGATGACATGGTCGATGAAGAAGAAGAAGAAGAAAATGATGATGATGATGCCTTTGATTACGATGATGATGGTGATTACATGTTTGAAAACATTGA...

Protein

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463 aa · TkA03G479910|TK1151|PROTEIN

MEVAIEGLDSDVSILKKVKHEEEVLNPTSEGGSSVSLSSGNINSDTSYHDDDNDGDDMVDEEEEEENDDDDAFDYDDDGDYMFENIEEEEEDEEAHYLSMQAQFDNVDLPPGVEASFSWLKDPAPSTSVPAGTSYTAAMVPQKIQEITISKGKEVASSSSDVLQVPVTGSSVVKKDEVAVLEVESVKKFEEFKLFDIVDDFSDHHFNSAGFQGQQPPRSWAKKIQDEWKILEKDLPDSIFVRAYETRMDLLRAVIIGPAG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G479910`
TK1151 ID	TkA03G479910
OH-1004 ID	LXL04_009881
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G479910

Location Chr03:120011618-120015122 (+)

Description Similar to UBC38: Putative ubiquitin-conjugating enzyme E2 38

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g53020`	Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.	No verified direct reference in this release
`At1g53025`	Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.	No verified direct reference in this release
`At3g15355`	Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.	No verified direct reference in this release
`At1g53023`	Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.	No verified direct reference in this release
`At2g16920`	Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009881 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0016567 protein ubiquitination Biological Process

GO:0005634 nucleus Cellular Component

GO:0005524 ATP binding Molecular Function

GO:0061631 ubiquitin conjugating enzyme activity Molecular Function

KEGG gene cross-reference

ath:AT1G53023

ath:AT1G53025

ath:AT2G16920

ath:AT3G15355

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.671

Rank 1 · TkA03G479910 · TK1151

Cytoplasm0.425

Rank 2 · TkA03G479910 · TK1151

Cell membrane0.055

Rank 3 · TkA03G479910 · TK1151

Endoplasmic reticulum0.047

Rank 4 · TkA03G479910 · TK1151

Golgi apparatus0.030

Rank 5 · TkA03G479910 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04147Nop1443-97 aa

PF03353Lin-849-160 aa

PF00179UQ_con224-343 aa

PF05743UEV273-345 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G479910	`PF04147`	Nop14	43	97	4.6	6.1
TkA03G479910	`PF03353`	Lin-8	49	160	0.88	9.8
TkA03G479910	`PF00179`	UQ_con	224	343	3.7e-22	79.2
TkA03G479910	`PF05743`	UEV	273	345	0.091	13.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C918`	Arabidopsis thaliana	sp\|Q9C918\|UBC38_ARATH Putative ubiquitin-conjugating enzyme E2 38	57.100%	Swiss-Prot	Medium
`Q8GY87`	Arabidopsis thaliana	sp\|Q8GY87\|UBC26_ARATH Probable ubiquitin-conjugating enzyme E2 26	54.200%	Swiss-Prot	Medium
`Q9LUQ5`	Arabidopsis thaliana	sp\|Q9LUQ5\|UBC25_ARATH Probable ubiquitin-conjugating enzyme E2 25	60.400%	Swiss-Prot	Medium
`F4HPP7`	Arabidopsis thaliana	sp\|F4HPP7\|UBC39_ARATH Putative ubiquitin-conjugating enzyme E2 39	52.700%	Swiss-Prot	Medium
`Q9ZVX1`	Arabidopsis thaliana	sp\|Q9ZVX1\|UBC23_ARATH Probable ubiquitin-conjugating enzyme E2 23	55.200%	Swiss-Prot	Medium

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