LXL04_009881 | RubberDandelionOmics

Gene overview

LXL04_009881

Reference: OH-1004 Chr: Chr02 Coordinates: 135311340-135314596 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1392 bp · LXL04_009881|LXL04_009881|OH1004|cDNA

ATGGAAGTTGCAATTGAGGGTTTGGATTCTGATGTTTCTATTCTGAAGAAAGTTAAACATGAGGAGGAAGTCTTGAATCCTACTAGTGAAGGTGGATCATCAGTATCACTAAGTTCAGGGAACATCAATTCAGACACATCATACCATGATGATGACAATGATGGTGATGACATGGtcgatgaagaagaagaagaagaaaatgatgatgatgatgccTTTGATTACGATGATGATGGTGATTACATGTTTGAAAacattga...

CDS

Download CDS FASTA

1392 bp · LXL04_009881|LXL04_009881|OH1004|CDS

ATGGAAGTTGCAATTGAGGGTTTGGATTCTGATGTTTCTATTCTGAAGAAAGTTAAACATGAGGAGGAAGTCTTGAATCCTACTAGTGAAGGTGGATCATCAGTATCACTAAGTTCAGGGAACATCAATTCAGACACATCATACCATGATGATGACAATGATGGTGATGACATGGTCGATGAAGAAGAAGAAGAAGAAAATGATGATGATGATGCCTTTGATTACGATGATGATGGTGATTACATGTTTGAAAACATTGA...

Protein

Download Protein FASTA

463 aa · LXL04_009881|LXL04_009881|OH1004|PROTEIN

MEVAIEGLDSDVSILKKVKHEEEVLNPTSEGGSSVSLSSGNINSDTSYHDDDNDGDDMVDEEEEEENDDDDAFDYDDDGDYMFENIEEEEEDEEAHYLSMQAQFDNVDLPPGVEASFSWLKDPAPSTSVPAGTSYTAAMVPQKIQEITISKGKEVASSSSDVLQVPVTGSSVVKKDEVAVLEVESVKKFEEFKLFDIVDDFSDHHFNSAGFQGQQPPRSWAKKIQDEWKILEKDLPDSIFVRAYETRMDLLRAVIIGPAG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009881`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_009881

Location Chr02:135311340-135314596 (+)

Description Similar to UBC38: Putative ubiquitin-conjugating enzyme E2 38

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g53025`	Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.	No verified direct reference in this release
`At1g53020`	Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.	No verified direct reference in this release
`At3g15355`	Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.	No verified direct reference in this release
`At2g16920`	Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.	No verified direct reference in this release
`At1g53023`	Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009881 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0016567 protein ubiquitination Biological Process

GO:0005634 nucleus Cellular Component

GO:0005524 ATP binding Molecular Function

GO:0061631 ubiquitin conjugating enzyme activity Molecular Function

KEGG gene cross-reference

ath:AT1G53023

ath:AT1G53025

ath:AT2G16920

ath:AT3G15355

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.671

Rank 1 · LXL04_009881 · OH-1004

Cytoplasm0.425

Rank 2 · LXL04_009881 · OH-1004

Cell membrane0.055

Rank 3 · LXL04_009881 · OH-1004

Endoplasmic reticulum0.047

Rank 4 · LXL04_009881 · OH-1004

Golgi apparatus0.030

Rank 5 · LXL04_009881 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00179.32UQ_con224-343 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009881	`PF00179.32`	UQ_con	224	343	3.7e-22	79.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8GY87`	Arabidopsis thaliana	Probable ubiquitin-conjugating enzyme E2 26	54.248%	Swiss-Prot	moderate database homology
`Q9C918`	Arabidopsis thaliana	Putative ubiquitin-conjugating enzyme E2 38	57.092%	Swiss-Prot	moderate database homology
`Q9LUQ5`	Arabidopsis thaliana	Probable ubiquitin-conjugating enzyme E2 25	60.385%	Swiss-Prot	moderate database homology
`Q9ZVX1`	Arabidopsis thaliana	Probable ubiquitin-conjugating enzyme E2 23	55.235%	Swiss-Prot	moderate database homology
`F4HPP7`	Arabidopsis thaliana	Putative ubiquitin-conjugating enzyme E2 39	51.815%	Swiss-Prot	moderate database homology

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