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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G371980
Reference: TK1151 Chr: Chr03 Coordinates: 91766513-91773285 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3375 bp · TkA03G371980|TK1151|cDNA

GTTATTAAAAGTTTGAGTGAGATACTAACAAGATGTCGCCGTTTACCTCCGTTAATAAGCCGCTAATGGAACCTATCTAAATAATCATCTCCAAAGGCCACGCCGGCCAGAACTCCGGCTTCGCTTCCCCTCAAAATTCACAGAGTAACTTCGTCTTCAGTTCGGAAGAGCGCTCAATTCTTTGCCTATTTCTTTCTGCTACATTTCTGAGAGCTCAATGTTGACAAGTATTCACTGAGGATGACGACATCATGAGATAT...

CDS

Download CDS FASTA

2601 bp · TkA03G371980|TK1151|CDS

ATGGCATCTCAATGTATATTCGCTTCGTCGTTGTTCCCCTCAACTTCCTTATCACGTCGACTACAATCTCGAAGAATTAGACGCTTACCTAACGCTAATTCATCAATTACATGTCACCTAAATAACTCAGAAGCCGAAGAAGAATCCAAAAACAAGATAAACGCATTGAATTTGCTCCAAATCTCTGTAACCCTAACCGTAATATCGGCTTCACTACCCCAGCCCGTATTAGCAGCAGCCAAAGTTACACAAAAGAAGCG...

Protein

Download Protein FASTA

866 aa · TkA03G371980|TK1151|PROTEIN

MASQCIFASSLFPSTSLSRRLQSRRIRRLPNANSSITCHLNNSEAEEESKNKINALNLLQISVTLTVISASLPQPVLAAAKVTQKKRPPKKTHTLTPEELKAWSQGLPVVANRIPYTDILNLKRDGKLKHIIKPPGRGLKERPVVVLAVLEDSKVVRLVLPSIDIDDKFWESWDAMEIDSICVQAYTPPVKMPEVPRPYLGFLAQFPSWMFSQAKPKPVSKKVLELRKAREELKRSRSNEMLNSKREMAKMEKAMRAQKK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G371980
TK1151 IDTkA03G371980
OH-1004 IDLXL04_008438
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)95.400
Protein coverage (%)TK1151 100.000 / OH-1004 99.769
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G371980
LocationChr03:91766513-91773285 (-)
DescriptionSimilar to FTSHI2: Probable inactive ATP-dependent zinc metalloprotease FTSHI 2, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g16290 Required for plastid development during embryogenesis.
FtsHi4 is essential for embryogenesis due to its influence on chloroplast development in Arabidopsis.2014 · DOI: 10.1371/journal.pone.0099741

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_008438 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006508 proteolysis Biological Process
GO:0030163 protein catabolic process Biological Process
GO:0045037 protein import into chloroplast stroma Biological Process
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009535 chloroplast thylakoid membrane Cellular Component
GO:0009941 chloroplast envelope Cellular Component
GO:0031969 chloroplast membrane Cellular Component
GO:0062091 Ycf2/FtsHi complex Cellular Component
GO:0004176 ATP-dependent peptidase activity Molecular Function
GO:0004222 metalloendopeptidase activity Molecular Function
GO:0005524 ATP binding Molecular Function
KEGG gene cross-reference
ath:AT3G16290
cyb:CYB_0631
pak:HMPREF0675_3307
sth:STH3198
syn:slr1604
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.828
Rank 1 · TkA03G371980 · TK1151
Mitochondrion0.133
Rank 2 · TkA03G371980 · TK1151
Nucleus0.049
Rank 3 · TkA03G371980 · TK1151
Cytoplasm0.024
Rank 4 · TkA03G371980 · TK1151
Cell membrane0.018
Rank 5 · TkA03G371980 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13207AAA_17201-238 aa
PF18699MRPL52201-277 aa
PF28285RcgA211-296 aa
PF00694Aconitase_C222-289 aa
PF13521AAA_28232-274 aa
PF06512Na_trans_assoc235-369 aa
PF13238AAA_18240-341 aa
PF13207AAA_17240-285 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G371980PF13207AAA_172012380.4111.7
TkA03G371980PF18699MRPL522012775.88.0
TkA03G371980PF28285RcgA2112962.57.4
TkA03G371980PF00694Aconitase_C2222892.29.3
TkA03G371980PF13521AAA_282322741.210.0
TkA03G371980PF06512Na_trans_assoc2353690.3611.8
TkA03G371980PF13238AAA_182403410.01816.2
TkA03G371980PF13207AAA_172402850.4111.7
TkA03G371980PF11947DUF34642433194.7e-0523.9
TkA03G371980PF07728AAA_52532840.008816.8
TkA03G371980PF07724AAA_22592710.03714.8
TkA03G371980PF13191AAA_164445020.002219.2
TkA03G371980PF13401AAA_224464750.0002122.3
TkA03G371980PF05496RuvB_N4464800.0002621.5
TkA03G371980PF06068TIP494464820.001218.8
TkA03G371980PF00004AAA4475791.4e-42145.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
A8MPR5Arabidopsis thalianasp|A8MPR5|FTSI2_ARATH Probable inactive ATP-dependent zinc metalloprotease FTSHI 2, chloroplastic73.300%Swiss-ProtHigh

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