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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G344780
Reference: TK1151 Chr: Chr03 Coordinates: 84838849-84844046 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1353 bp · TkA03G344780|TK1151|cDNA

TTTGGACTAAATTGGCGTTGCGTTTTGGCGCGTCATGTGGGCCATCCTATCACGGTGCGCGCCATATCATCGGCGCAACTCCCAACCCGATCAAAAGTCTTCGCTATTTTCGTCATCATATTCATCGCCGTAGACGTCTTCTTCAACCCACTTCGAACGACTCCACTTTCTTCAACCTACAAAACTCCTAATTTTGTTGACTTCTCTTTCCGATTAATATTCCTCCGACCAAATTGTAAGACCTCTCCGTCGCGATTAAT...

CDS

Download CDS FASTA

1059 bp · TkA03G344780|TK1151|CDS

TTTGGACTAAATTGGCGTTGCGTTTTGGCGCGTCATGTGGGCCATCCTATCACGGTGCGCGCCATATCATCGGCGCAACTCCCAACCCGATCAAAAGTCTTCGCTATTTTCGTCATCATATTCATCGCCGTAGACGTCTTCTTCAACCCACTTCGAACGACTCCACTTTCTTCAACCTACAAAACTCCTAATTTTGTTGACTTCTCTTTCCGATTAATATTCCTCCGACCAAATTGTAAGACCTCTCCGTCGCGATTAAT...

Protein

Download Protein FASTA

352 aa · TkA03G344780|TK1151|PROTEIN

FGLNWRCVLARHVGHPITVRAISSAQLPTRSKVFAIFVIIFIAVDVFFNPLRTTPLSSTYKTPNFVDFSFRLIFLRPNCKTSPSRLIRRWRMGCFASKSADSKASRLSRWRATGIVALRDGKLKSFPDEVLELDKSVRTLDLTHNKLVDVPEEISKLINMQRLILANNVIERLPMNLGKLKSLKFIILDGNKLTTLPDEVGQLVRLERLSISGNLLTGLPETIGSLRNLLLLNVSSNKIKSLPESIGSCFSLEELQANEN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G344780
TK1151 IDTkA03G344780
OH-1004 IDLXL04_008682
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.400
Protein coverage (%)TK1151 97.727 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G344780
LocationChr03:84838849-84844046 (+)
DescriptionSimilar to IRL7: Plant intracellular Ras-group-related LRR protein 7
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g30105 LRR repeats and ubiquitin-like domain-containing protein At2g30105. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os03g0212200 Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction. No verified direct reference in this release
Os10g0456200 Leucine-rich repeat protein that likely mediates protein interactions, possibly in the context of signal transduction. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_008682 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0035556 intracellular signal transduction Biological Process
GO:0005737 cytoplasm Cellular Component
KEGG gene cross-reference
ath:AT2G30105
dosa:Os03g0212200
dosa:Os10g0456200
xla:432302
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.489
Rank 1 · TkA03G344780 · TK1151
Nucleus0.282
Rank 2 · TkA03G344780 · TK1151
Cell membrane0.140
Rank 3 · TkA03G344780 · TK1151
Golgi apparatus0.113
Rank 4 · TkA03G344780 · TK1151
Mitochondrion0.110
Rank 5 · TkA03G344780 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00560LRR_145-56 aa
PF23598LRR_14118-184 aa
PF08653DASH_Dam1122-155 aa
PF12799LRR_4135-171 aa
PF13855LRR_8136-193 aa
PF00560LRR_1136-157 aa
PF23286LRR_13137-203 aa
PF24048LRR_NXF1-5139-195 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G344780PF00560LRR_145565.2e-1347.1
TkA03G344780PF23598LRR_141181844.5e-2382.3
TkA03G344780PF08653DASH_Dam11221550.05214.1
TkA03G344780PF12799LRR_41351711.1e-1557.9
TkA03G344780PF13855LRR_81361937.7e-1967.9
TkA03G344780PF00560LRR_11361575.2e-1347.1
TkA03G344780PF23286LRR_131372030.1112.9
TkA03G344780PF24048LRR_NXF1-51391950.1212.7
TkA03G344780PF23211LRR_LRWD11512163.3e-0524.4
TkA03G344780PF12799LRR_41591971.1e-1557.9
TkA03G344780PF00560LRR_11591805.2e-1347.1
TkA03G344780PF23598LRR_141762564.5e-2382.3
TkA03G344780PF23211LRR_LRWD11772393.3e-0524.4
TkA03G344780PF13306LRR_51801880.0314.9
TkA03G344780PF00560LRR_11822035.2e-1347.1
TkA03G344780PF08653DASH_Dam11922250.05214.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P0C895Arabidopsis thalianasp|P0C895|Y2010_ARATH LRR repeats and ubiquitin-like domain-containing protein At2g3010542.600%Swiss-ProtLow
B9F655Oryza sativa subsp. japonicasp|B9F655|PIRL7_ORYSJ Plant intracellular Ras-group-related LRR protein 777.800%Swiss-ProtHigh
Q7XDQ7Oryza sativa subsp. japonicasp|Q7XDQ7|PIRL8_ORYSJ Plant intracellular Ras-group-related LRR protein 841.400%Swiss-ProtLow

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