TkA03G198930 | RubberDandelionOmics

Gene overview

TkA03G198930

Reference: TK1151 Chr: Chr03 Coordinates: 49895975-49901162 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2796 bp · TkA03G198930|TK1151|cDNA

AATACAACAAATTTGTTGTTTACTAATTTATCTGCTTAAACAACTCCGCCGTCTCTTTCTATCTCACAAGTCACAACAACAATATTGTAACGTAACGTCGGACAACATTAACAAAATTCTCAAGAATAGATCGAGTGGAAGACATGGTTTGGTTTGGATGTTGGATTGCACTACTAGTGTTCACGGTGGAGGTGGGGGGAGCAACCGTGAGTTATGACGGAAGATCACTTATTATTGATGGACAGCGCACCATATTGTTC...

CDS

Download CDS FASTA

2649 bp · TkA03G198930|TK1151|CDS

GTTTGCCGTGCAATACAACAAATTTGTTGTTTACTAATTTATCTGCTTAAACAACTCCGCCGTCTCTTTCTATCTCACAAGTCACAACAACAATATTGTAACGTAACGTCGGACAACATTAACAAAATTCTCAAGAATGTATACATATGGTTATGTATATATATATGTAAAGTCCAACAAGAATGCTCTAACAATTTACTCCCTTCTCTGTCACTTGGTTTTAGAGATCGAGTGGAAGACATGGTTTGGTTTGGATGTTG...

Protein

Download Protein FASTA

882 aa · TkA03G198930|TK1151|PROTEIN

VCRAIQQICCLLIYLLKQLRRLFLSHKSQQQYCNVTSDNINKILKNVYIWLCIYICKVQQECSNNLLPSLSLGFRDRVEDMVWFGCWIALLVFTVEVGGATVSYDGRSLIIDGQRTILFSGSIHYARSTPDMWPSLIAKAKKGGLDVIQTYVFWNLHEPQPGQYDFSGRNDIISFIKQVQQQGLYVSLRIGPFIEAEWTYGGLPFWLHDVPGIVFRTNNEPFKLHMQNFTTKIVNMMKAENLFASQGGPIILSQIENEYQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G198930`
TK1151 ID	TkA03G198930
OH-1004 ID	LXL04_007628
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	97.500
Protein coverage (%)	TK1151 99.433 / OH-1004 99.885 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G198930

Location Chr03:49895975-49901162 (-)

Description Similar to BGAL16: Beta-galactosidase 16

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g77410`	Beta-galactosidase 16.	No verified direct reference in this release
`At5g63800`	Beta-galactosidase 6.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0428100`	Beta-galactosidase 7.	No verified direct reference in this release
`Os01g0580200`	Beta-galactosidase 2.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007628 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009827 plant-type cell wall modification Biological Process

GO:0019388 galactose catabolic process Biological Process

GO:0048354 mucilage biosynthetic process involved in seed coat development Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005773 vacuole Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009536 plastid Cellular Component

GO:0048046 apoplast Cellular Component

GO:0004565 beta-galactosidase activity Molecular Function

GO:0030246 carbohydrate binding Molecular Function

KEGG gene cross-reference

ath:AT1G77410

ath:AT5G63800

dosa:Os01g0580200

dosa:Os08g0549200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.395

Rank 1 · TkA03G198930 · TK1151

Extracellular0.214

Rank 2 · TkA03G198930 · TK1151

Cytoplasm0.184

Rank 3 · TkA03G198930 · TK1151

Endoplasmic reticulum0.169

Rank 4 · TkA03G198930 · TK1151

Cell membrane0.158

Rank 5 · TkA03G198930 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25317SAM_SMF2-44 aa

PF01301Glyco_hydro_35108-415 aa

PF02449Glyco_hydro_42131-262 aa

PF02140SUEL_Lectin292-309 aa

PF17834GHD439-494 aa

PF13385Laminin_G_3538-595 aa

PF13364BetaGal_ABD2542-614 aa

PF21467BetaGal_gal-bd548-587 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G198930	`PF25317`	SAM_SMF	2	44	0.43	11.6
TkA03G198930	`PF01301`	Glyco_hydro_35	108	415	2.5e-111	373.0
TkA03G198930	`PF02449`	Glyco_hydro_42	131	262	1.6e-05	25.2
TkA03G198930	`PF02140`	SUEL_Lectin	292	309	1.1e-19	71.3
TkA03G198930	`PF17834`	GHD	439	494	8.5e-24	83.8
TkA03G198930	`PF13385`	Laminin_G_3	538	595	0.0099	16.7
TkA03G198930	`PF13364`	BetaGal_ABD2	542	614	3.8e-07	31.6
TkA03G198930	`PF21467`	BetaGal_gal-bd	548	587	1.6e-25	89.7
TkA03G198930	`PF13385`	Laminin_G_3	672	738	0.0099	16.7
TkA03G198930	`PF13364`	BetaGal_ABD2	675	750	3.8e-07	31.6
TkA03G198930	`PF21467`	BetaGal_gal-bd	682	748	1.6e-25	89.7
TkA03G198930	`PF02140`	SUEL_Lectin	804	881	1.1e-19	71.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8GX69`	Arabidopsis thaliana	sp\|Q8GX69\|BGA16_ARATH Beta-galactosidase 16	59.300%	Swiss-Prot	High
`Q9FFN4`	Arabidopsis thaliana	sp\|Q9FFN4\|BGAL6_ARATH Beta-galactosidase 6	58.700%	Swiss-Prot	High
`Q75HQ3`	Oryza sativa subsp. japonica	sp\|Q75HQ3\|BGAL7_ORYSJ Beta-galactosidase 7	51.700%	Swiss-Prot	High
`Q8W0A1`	Oryza sativa subsp. japonica	sp\|Q8W0A1\|BGAL2_ORYSJ Beta-galactosidase 2	49.000%	Swiss-Prot	Medium

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