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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G071330
Reference: TK1151 Chr: Chr03 Coordinates: 18323211-18326205 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2514 bp · TkA03G071330|TK1151|cDNA

TAAATATGTTAGTTAAAGCAGTATGTTTTGTCATTTTCTATTTTTCTAGACCTTGATTCGCGTTATGCATTTTCCCCTGTTTGATGGAAAACTCAAGCCAGAAGAGAGAAAAGAAGCAAACAAAAAAGAGACAACTCACCTCTCTACTCTCCCTCTTTCCCTAGTCCACTCCTCAAACGATGTGCGCCCTACCTAAACCCTTCCACCACCGCCACCGCCACCACTATCTATTGTCTTTCATTATCCTCCTCACCGCCACC...

CDS

Download CDS FASTA

2034 bp · TkA03G071330|TK1151|CDS

ATGTGCGCCCTACCTAAACCCTTCCACCACCGCCACCGCCACCACTATCTATTGTCTTTCATTATCCTCCTCACCGCCACCGCCTCCGCCGTGGACCCGAAACCGGTTGAAGCACTAGTGCCCTCCGACGCCGTCGCGCTACTCAAATTCAAGCTACAAGCTGACATTGGAAACAAGCTCCTCTATGATCTTAACGAGCGGTTCGATTATTGTCAATGGCAAGGAGCGAAATGTGTTCAAGGTCGAGTTGTTCGGTTTGT...

Protein

Download Protein FASTA

677 aa · TkA03G071330|TK1151|PROTEIN

MCALPKPFHHRHRHHYLLSFIILLTATASAVDPKPVEALVPSDAVALLKFKLQADIGNKLLYDLNERFDYCQWQGAKCVQGRVVRFVLQGCGLSGVFADNTLTRLDQLRVLSLRNNSLSGAIPDLSALTNLKTLFLDHNAFSGKFPLPLVALHRLRSLDLARNNLSGPLPIELNSLNRLTYLRLEWNRFNGSLPPLNITALEVFNVSGNNLTGSVPVTPALSRFDISSYLLNPGLCGKILNKICSSNAPFFDTPSGVSAP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G071330
TK1151 IDTkA03G071330
OH-1004 IDLXL04_006788
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)97.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G071330
LocationChr03:18323211-18326205 (+)
DescriptionSimilar to At5g67200: Probable inactive receptor kinase At5g67200
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g67200 Probable inactive receptor kinase At5g67200. No verified direct reference in this release
At1g60630 Inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630. No verified direct reference in this release
At1g48480 Probable inactive receptor kinase At1g48480. No verified direct reference in this release
At1g68400 Probable leucine-rich repeat receptor-like protein kinase At1g68400. No verified direct reference in this release
At2g26730 Probable inactive receptor kinase At2g26730. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_006788 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0042742 defense response to bacterium Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0004672 protein kinase activity Molecular Function
GO:0004674 protein serine/threonine kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0042802 identical protein binding Molecular Function
KEGG gene cross-reference
ath:AT1G48480
ath:AT1G60630
ath:AT1G68400
ath:AT3G17840
ath:AT5G67200
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.868
Rank 1 · TkA03G071330 · TK1151
Cytoplasm0.077
Rank 2 · TkA03G071330 · TK1151
Endoplasmic reticulum0.076
Rank 3 · TkA03G071330 · TK1151
Nucleus0.067
Rank 4 · TkA03G071330 · TK1151
Lysosome / Vacuole0.018
Rank 5 · TkA03G071330 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00560LRR_186-97 aa
PF13855LRR_898-140 aa
PF23598LRR_14101-202 aa
PF00560LRR_1107-124 aa
PF12799LRR_4107-139 aa
PF13855LRR_8129-189 aa
PF00560LRR_1130-149 aa
PF12799LRR_4147-169 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G071330PF00560LRR_186971e-1246.3
TkA03G071330PF13855LRR_8981403.9e-0833.6
TkA03G071330PF23598LRR_141012025.9e-0522.7
TkA03G071330PF00560LRR_11071241e-1246.3
TkA03G071330PF12799LRR_41071396.1e-1142.9
TkA03G071330PF13855LRR_81291893.9e-0833.6
TkA03G071330PF00560LRR_11301491e-1246.3
TkA03G071330PF12799LRR_41471696.1e-1142.9
TkA03G071330PF00560LRR_11541761e-1246.3
TkA03G071330PF12799LRR_41541966.1e-1142.9
TkA03G071330PF00560LRR_11781951e-1246.3
TkA03G071330PF12799LRR_41782136.1e-1142.9
TkA03G071330PF13855LRR_81992133.9e-0833.6
TkA03G071330PF12799LRR_42002276.1e-1142.9
TkA03G071330PF00560LRR_12012171e-1246.3
TkA03G071330PF02674Colicin_V2823170.02115.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q93Y06Arabidopsis thalianasp|Q93Y06|Y5720_ARATH Probable inactive receptor kinase At5g6720059.400%Swiss-ProtHigh
Q84MA9Arabidopsis thalianasp|Q84MA9|Y1063_ARATH Inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g6063047.100%Swiss-ProtMedium
Q9LP77Arabidopsis thalianasp|Q9LP77|Y1848_ARATH Probable inactive receptor kinase At1g4848034.600%Swiss-ProtMedium
Q9M9C5Arabidopsis thalianasp|Q9M9C5|Y1680_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g6840035.800%Swiss-ProtMedium
O48788Arabidopsis thalianasp|O48788|Y2267_ARATH Probable inactive receptor kinase At2g2673038.600%Swiss-ProtMedium

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