TkA03G030070 | RubberDandelionOmics

Gene overview

TkA03G030070

Reference: TK1151 Chr: Chr03 Coordinates: 8060268-8066350 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2652 bp · TkA03G030070|TK1151|cDNA

TTTCTCTTTCACGCACTCTCTCTCTCTCTTTCGAGAAGGCGATTGCAGAGAACACTCAGTACTACTGTAAAAGAGTAACAAAGAGAAAAAAAAGGAAGAGACATAGAAAGAGAAAGACGAAAAACGACAATCAAGCAAGAATTCAAGAACTACGACAACGATATCTCTTTTTCACTATCTTCATAGAGATTGCGTCCAAGAAGATGGTACTGCTGTTATGGAAGTAGCTAGATCTTCATTCGAAGAGGAGCTGCACCCCA...

CDS

Download CDS FASTA

2283 bp · TkA03G030070|TK1151|CDS

ATGGAAGTAGCTAGATCTTCATTCGAAGAGGAGCTGCACCCCAAGAACAAATTCCCCTTCAATTCTATGTCACAAGATTATATTTTCAATTTTTCGCATGGGTTTGAAAGACCGTCGAGTCAAGATCAACAACAGCAGAATCACATCGCGCATCAGATCCGTCGGGATAAGTTAAGGGTCCAAGGCTTTGACACACCATCGGGTAATTCATTGGTGGGATTAGAAGATGACGGAGGTGGTGGCGGAGCCGGCGGTGGGCT...

Protein

Download Protein FASTA

760 aa · TkA03G030070|TK1151|PROTEIN

MEVARSSFEEELHPKNKFPFNSMSQDYIFNFSHGFERPSSQDQQQQNHIAHQIRRDKLRVQGFDTPSGNSLVGLEDDGGGGGAGGGLPAVYETGAGMLSEMFNFPTGGPATELLENQINFQRNQRPSAGDWYGNSAQAMQLFLMNPSHDSPSSQSSSHHHHNPSTSSSTLHMLLPNTVASSNSTLHHQQSFGSTSNSGHGQFSPSTQFAWVPPGGTSGGGGGGGDSHGLSLSLSSTLQHLEAAKVEELRIGDDPAAAMLY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G030070`
TK1151 ID	TkA03G030070
OH-1004 ID	LXL04_006383
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	99.900
Protein coverage (%)	TK1151 100.000 / OH-1004 77.971 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G030070

Location Chr03:8060268-8066350 (+)

Description Similar to BLH6: BEL1-like homeodomain protein 6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g36870`	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf.	No verified direct reference in this release
`At2g23760`	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf.	The Arabidopsis BEL1-LIKE HOMEODOMAIN proteins SAW1 and SAW2 act redundantly to regulate KNOX expression spatially in leaf margins.2007 · DOI: 10.1105/tpc.106.048769
`At5g41410`	Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors.	Homeotic Transformation of Ovules into Carpel-like Structures in Arabidopsis.1994 · DOI: 10.1105/tpc.6.3.333 Genetic and molecular interactions between BELL1 and MADS box factors support ovule development in Arabidopsis.2007 · DOI: 10.1105/tpc.107.051797 The transcription factors BEL1 and SPL are required for cytokinin and auxin signaling during ovule development in Arabidopsis.2012 · DOI: 10.1105/tpc.112.100164
`At2g35940`	BEL1-like homeodomain protein 1.	No verified direct reference in this release
`At2g16400`	BEL1-like homeodomain protein 7.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006383 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0048481 plant ovule development Biological Process

GO:0048510 regulation of timing of transition from vegetative to reproductive phase Biological Process

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

KEGG gene cross-reference

ath:AT1G19700

ath:AT1G75410

ath:AT2G16400

ath:AT4G34610

ath:AT5G41410

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.971

Rank 1 · TkA03G030070 · TK1151

Cytoplasm0.093

Rank 2 · TkA03G030070 · TK1151

Cell membrane0.028

Rank 3 · TkA03G030070 · TK1151

Endoplasmic reticulum0.017

Rank 4 · TkA03G030070 · TK1151

Plastid0.009

Rank 5 · TkA03G030070 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07526POX109-163 aa

PF00046Homeodomain119-128 aa

PF07526POX313-444 aa

PF02724CDC45368-412 aa

PF05920Homeobox_KN513-552 aa

PF01496V_ATPase_I516-606 aa

PF00046Homeodomain520-552 aa

PF15996PNISR554-618 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G030070	`PF07526`	POX	109	163	2.4e-49	168.0
TkA03G030070	`PF00046`	Homeodomain	119	128	5.2e-07	30.1
TkA03G030070	`PF07526`	POX	313	444	2.4e-49	168.0
TkA03G030070	`PF02724`	CDC45	368	412	8.2	5.3
TkA03G030070	`PF05920`	Homeobox_KN	513	552	2.3e-19	69.6
TkA03G030070	`PF01496`	V_ATPase_I	516	606	0.39	9.3
TkA03G030070	`PF00046`	Homeodomain	520	552	5.2e-07	30.1
TkA03G030070	`PF15996`	PNISR	554	618	0.18	12.9
TkA03G030070	`PF07526`	POX	563	600	2.4e-49	168.0
TkA03G030070	`PF06020`	Roughex	564	660	7.5	6.1
TkA03G030070	`PF02724`	CDC45	564	605	8.2	5.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SW80`	Arabidopsis thaliana	sp\|Q9SW80\|BLH2_ARATH BEL1-like homeodomain protein 2	48.400%	Swiss-Prot	Medium
`Q94KL5`	Arabidopsis thaliana	sp\|Q94KL5\|BLH4_ARATH BEL1-like homeodomain protein 4	82.000%	Swiss-Prot	Low
`Q38897`	Arabidopsis thaliana	sp\|Q38897\|BEL1_ARATH Homeobox protein BEL1 homolog	57.000%	Swiss-Prot	Low
`Q9SJ56`	Arabidopsis thaliana	sp\|Q9SJ56\|BLH1_ARATH BEL1-like homeodomain protein 1	49.800%	Swiss-Prot	Low
`Q9SIW1`	Arabidopsis thaliana	sp\|Q9SIW1\|BLH7_ARATH BEL1-like homeodomain protein 7	53.200%	Swiss-Prot	Low

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