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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G605350
Reference: TK1151 Chr: Chr02 Coordinates: 156160225-156163307 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1263 bp · TkA02G605350|TK1151|cDNA

ATGGGAAAGCTATGGGTTGGTGGGTTCTTTCTCTTATTCGCTTTTGCAAACACCAACCTCTCTTCCGGTTGTTTTGATCACGAAGGGCGAGCTCTCCTCCGATTCAAACACAACTTAGAATCAGACCCTTCTGGTCTACTCTCATCTTGGCACGGAAACAAGTGTTGCGAGTGGCAAGGCGTGGGCTGTGATAATGCAACCGGACATGTAACTAGGCTTCATCTCGGAAGAGATTCTTGGAGTTCCACACCGCGGTTAGA...

CDS

Download CDS FASTA

1263 bp · TkA02G605350|TK1151|CDS

ATGGGAAAGCTATGGGTTGGTGGGTTCTTTCTCTTATTCGCTTTTGCAAACACCAACCTCTCTTCCGGTTGTTTTGATCACGAAGGGCGAGCTCTCCTCCGATTCAAACACAACTTAGAATCAGACCCTTCTGGTCTACTCTCATCTTGGCACGGAAACAAGTGTTGCGAGTGGCAAGGCGTGGGCTGTGATAATGCAACCGGACATGTAACTAGGCTTCATCTCGGAAGAGATTCTTGGAGTTCCACACCGCGGTTAGA...

Protein

Download Protein FASTA

420 aa · TkA02G605350|TK1151|PROTEIN

MGKLWVGGFFLLFAFANTNLSSGCFDHEGRALLRFKHNLESDPSGLLSSWHGNKCCEWQGVGCDNATGHVTRLHLGRDSWSSTPRLEGNKLDSSLAELTHLSYMDLSGNDFRGSSIPKFIESMSQLKYLNLSSAGFSGVVPHGIGNLSSLRILDLSYMELVVDDFEWFSGLLSLEHLDLSQLSISNARNLNMVLMYRIPSLRELRSSGCNLSNSHFTRTHLEPNLTLSTIYTLDLSLNSFQGEFPLFIQNLTSLHVLDLA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G605350
TK1151 IDTkA02G605350
OH-1004 IDLXL04_011896
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)62.500
Protein coverage (%)TK1151 60.000 / OH-1004 10.767
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G605350
LocationChr02:156160225-156163307 (+)
DescriptionSimilar to EIX2: Receptor-like protein EIX2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g25020 Recognizes fungal (e.g. B.cinerea and A.niger) endopolygalacturonases (PGs, e.g.
Fungal endopolygalacturonases are recognized as microbe-associated molecular patterns by the arabidopsis receptor-like protein RESPONSIVENESS TO BOTRYTIS POLYGALACTURONASES1.2014 · DOI: 10.1104/pp.113.230698
At3g25010 May be involved in ABA-induced senescence responses.
Gene silencing to investigate the roles of receptor-like proteins in Arabidopsis.2008 · DOI: 10.4161/psb.3.10.6543
At3g24900 Receptor-like protein 39. No verified direct reference in this release
At3g24982 Receptor-like protein 40. No verified direct reference in this release
At2g32660 Receptor like protein 22. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_011896 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002220 innate immune response activating cell surface receptor signaling pathway Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
sly:543900
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.779
Rank 1 · TkA02G605350 · TK1151
Endoplasmic reticulum0.126
Rank 2 · TkA02G605350 · TK1151
Cytoplasm0.070
Rank 3 · TkA02G605350 · TK1151
Nucleus0.062
Rank 4 · TkA02G605350 · TK1151
Extracellular0.036
Rank 5 · TkA02G605350 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00805Pentapeptide16-22 aa
PF08263LRRNT_226-64 aa
PF00560LRR_186-94 aa
PF12799LRR_486-111 aa
PF25013LRR_Zer-191-114 aa
PF13855LRR_893-111 aa
PF23598LRR_1493-179 aa
PF29594LRR_SKP297-156 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G605350PF00805Pentapeptide16220.05113.9
TkA02G605350PF08263LRRNT_226645.4e-1143.3
TkA02G605350PF00560LRR_186941.4e-2687.5
TkA02G605350PF12799LRR_4861111.4e-1970.4
TkA02G605350PF25013LRR_Zer-1911140.0002422.0
TkA02G605350PF13855LRR_8931111.3e-29102.4
TkA02G605350PF23598LRR_14931795.8e-2691.8
TkA02G605350PF29594LRR_SKP2971566e-0523.2
TkA02G605350PF13516LRR_6991110.07613.8
TkA02G605350PF24048LRR_NXF1-5991340.3811.1
TkA02G605350PF00560LRR_11001201.4e-2687.5
TkA02G605350PF12799LRR_41001331.4e-1970.4
TkA02G605350PF00805Pentapeptide1001150.05113.9
TkA02G605350PF23211LRR_LRWD11041800.01715.6
TkA02G605350PF24141LRR_ComC1151493.7e-0627.6
TkA02G605350PF13855LRR_81181571.3e-29102.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LJS0Arabidopsis thalianasp|Q9LJS0|RLP42_ARATH Receptor-like protein 4235.200%Swiss-ProtMedium
Q9LJS2Arabidopsis thalianasp|Q9LJS2|RLP41_ARATH Receptor-like protein 4133.500%Swiss-ProtMedium
F4J7T6Arabidopsis thalianasp|F4J7T6|RLP39_ARATH Receptor-like protein 3933.200%Swiss-ProtMedium
Q9LRW9Arabidopsis thalianasp|Q9LRW9|RLP40_ARATH Receptor-like protein 4034.300%Swiss-ProtMedium
O48851Arabidopsis thalianasp|O48851|RLP22_ARATH Receptor like protein 2237.100%Swiss-ProtLow

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