RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_011896
Reference: OH-1004 Chr: Chr03 Coordinates: 2426263-2441668 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

6969 bp · LXL04_011896|LXL04_011896|OH1004|cDNA

ATGCCATCTGTGAATCATTTGATCGAGACTCGAGAGAACTGTTTTGGTATCAGCTTCGATTCCAGGTGGGTACTATTGGAGGCACTTGACAAAGTATCACCAGGAATTGTCAACTGGAAAATTGCAAATAAGCCCCCGATTAAAATGCCATTCAGAAAAGTAGAAAACTGTAACCAAGTTGTTAAAATTGGTAAACAGTTGAAGTTTTCACTGGTCAATATTGCTGGAAATGACATTGTTAATGAGTCAAATATCTACGA...

CDS

Download CDS FASTA

6969 bp · LXL04_011896|LXL04_011896|OH1004|CDS

ATGCCATCTGTGAATCATTTGATCGAGACTCGAGAGAACTGTTTTGGTATCAGCTTCGATTCCAGGTGGGTACTATTGGAGGCACTTGACAAAGTATCACCAGGAATTGTCAACTGGAAAATTGCAAATAAGCCCCCGATTAAAATGCCATTCAGAAAAGTAGAAAACTGTAACCAAGTTGTTAAAATTGGTAAACAGTTGAAGTTTTCACTGGTCAATATTGCTGGAAATGACATTGTTAATGAGTCAAATATCTACGA...

Protein

Download Protein FASTA

2322 aa · LXL04_011896|LXL04_011896|OH1004|PROTEIN

MPSVNHLIETRENCFGISFDSRWVLLEALDKVSPGIVNWKIANKPPIKMPFRKVENCNQVVKIGKQLKFSLVNIAGNDIVNESNIYDSLDFIKSVFNTKLKSDLAQLHDDGETMEYDRQALLQFKSSLSSDSTGQLLSWTGNNCCRWQGVGCDNSTGHVTRLDLGSDLSDSLVMNELSSSLAELSRLSYLDLSGVYFRGTRIPEFIGSMSQLRFLNLSSAGFSGVVPHGIGNLSSLQVLDLSDMELIDIDDVTWLTSLVS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDLXL04_011896
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_011896
LocationChr03:2426263-2441668 (-)
DescriptionSimilar to EIX2: Receptor-like protein EIX2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g11010 Receptor-like protein 34. No verified direct reference in this release
At2g15080 Receptor-like protein 19. No verified direct reference in this release
At4g04220 Receptor-like protein 46. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_011896 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0002220 innate immune response activating cell surface receptor signaling pathway Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
sly:543900
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.812
Rank 1 · LXL04_011896 · OH-1004
Endoplasmic reticulum0.108
Rank 2 · LXL04_011896 · OH-1004
Cytoplasm0.075
Rank 3 · LXL04_011896 · OH-1004
Nucleus0.068
Rank 4 · LXL04_011896 · OH-1004
Lysosome / Vacuole0.028
Rank 5 · LXL04_011896 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263.18LRRNT_2116-153 aa
PF23598.2LRR_14174-349 aa
PF13855.13LRR_8211-268 aa
PF23598.2LRR_14413-492 aa
PF13855.13LRR_8414-472 aa
PF12799.14LRR_4461-496 aa
PF23598.2LRR_14474-629 aa
PF13855.13LRR_8485-543 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_011896PF08263.18LRRNT_21161531.2e-1248.6
LXL04_011896PF23598.2LRR_141743496.1e-41141.1
LXL04_011896PF13855.13LRR_82112688.7e-59195.9
LXL04_011896PF23598.2LRR_144134926.1e-41141.1
LXL04_011896PF13855.13LRR_84144728.7e-59195.9
LXL04_011896PF12799.14LRR_44614962.5e-35120.4
LXL04_011896PF23598.2LRR_144746296.1e-41141.1
LXL04_011896PF13855.13LRR_84855438.7e-59195.9
LXL04_011896PF23211.1LRR_LRWD15065799.5e-0935.9
LXL04_011896PF13855.13LRR_85325918.7e-59195.9
LXL04_011896PF13855.13LRR_89049608.7e-59195.9
LXL04_011896PF12799.14LRR_49269612.5e-35120.4
LXL04_011896PF13855.13LRR_89299848.7e-59195.9
LXL04_011896PF14223.15Retrotran_gag_2166418098.2e-2691.5
LXL04_011896PF22936.2Pol_BBD190219501.5e-0732.4
LXL04_011896PF13855.13LRR_8216322188.7e-59195.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SRL2Arabidopsis thalianaReceptor-like protein 3433.051%Swiss-Protweak database homology
Q9ZUK3Arabidopsis thalianaReceptor-like protein 1931.393%Swiss-Protweak database homology
F4JGB6Arabidopsis thalianaReceptor-like protein 4634.706%Swiss-Protweak database homology

JBrowse

View in Genome Browser