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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G603730
Reference: TK1151 Chr: Chr02 Coordinates: 155667008-155670507 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2663 bp · TkA02G603730|TK1151|cDNA

TTGGGTCCGTTATTAGACAGAGGTGTAGATTGTATAAGAAAGTGATACGACACCGTGTGATAAACTTATAAAGCACAGAAATATTAGCAGCTCGTAGAAAGACCTGGAGAGCGTGGAAGCATCCAGAATAGACCCGAACCTCACTCACAACGCCCGGTATCGTAGAAGCACCTAGAACCACCACCTTCATATAAAACCCCTCATAGACTGCAATGGCGGAGGTTCAGATGGCCGATGCAGAGACGTTCGCCTTCCAGGCC...

CDS

Download CDS FASTA

1113 bp · TkA02G603730|TK1151|CDS

ATGAACAACATCAAGTTGTATGTGAGGAGGGTGTTCATCATGGACAACTGCGAGGAGTTGATTCCAGAGTGGCTCGGTTTTGTGAAGGGTGTTGTGGATTCTGATGACTTGCCACTGAACATCTCCCGTGAAATGCTTCAACAAAACAAGATCCTGAAAGTTATCAGGAAGAATCTTGTCAAGAAATGCATTGAGATGTTCAACGAGATTGCTGAGAACAAGGAAGACTACAACAAATTCTATGAAGCCTTCTCCAAGAA...

Protein

Download Protein FASTA

370 aa · TkA02G603730|TK1151|PROTEIN

MNNIKLYVRRVFIMDNCEELIPEWLGFVKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRPKLADLLRYHSTKSGDELTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLFMVDAIDEYAVGQLKEYDGKKLVSATKEGLKLEDETEEEKQKKEEKKKSFENLCKTIKDILGDKVEKVVVSDRIVDSPCCLVTGEYGWTANMERIMKA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G603730
TK1151 IDTkA02G603730
OH-1004 IDLXL04_016133
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)84.300
Protein coverage (%)TK1151 99.730 / OH-1004 52.865
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G603730
LocationChr02:155667008-155670507 (-)
DescriptionSimilar to HSC80: Heat shock cognate protein 80
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g52640 Functions as a holding molecular chaperone (holdase) which stabilizes unfolding protein intermediates and rapidly releases them in an active form once stress has abated. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os09g0482100 Molecular chaperone that promotes the maturation, structural maintenance and proper regulation of specific target proteins involved for instance in cell cycle control and signal transduction. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_016133 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006457 protein folding Biological Process
GO:0006952 defense response Biological Process
GO:0009408 response to heat Biological Process
GO:0009414 response to water deprivation Biological Process
GO:0009651 response to salt stress Biological Process
GO:0009908 flower development Biological Process
GO:0010187 negative regulation of seed germination Biological Process
GO:0010286 heat acclimation Biological Process
GO:0034605 cellular response to heat Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0045087 innate immune response Biological Process
GO:0048366 leaf development Biological Process
KEGG gene cross-reference
ath:AT5G56000
ath:AT5G56030
dosa:Os09g0482100
osa:9267802
sly:543903
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.687
Rank 1 · TkA02G603730 · TK1151
Nucleus0.317
Rank 2 · TkA02G603730 · TK1151
Endoplasmic reticulum0.119
Rank 3 · TkA02G603730 · TK1151
Cell membrane0.090
Rank 4 · TkA02G603730 · TK1151
Mitochondrion0.088
Rank 5 · TkA02G603730 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00183HSP902-365 aa
PF29011DDB_G0280785_1st_TPR41-92 aa
PF24497MIT_ATG143-87 aa
PF10158LOH1CR1245-86 aa
PF25100DUF780956-86 aa
PF15009STING_LBD72-124 aa
PF24497MIT_ATG1103-129 aa
PF30877RSRC1116-129 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G603730PF00183HSP9023656.4e-179596.9
TkA02G603730PF29011DDB_G0280785_1st_TPR41920.1912.6
TkA02G603730PF24497MIT_ATG143870.2912.0
TkA02G603730PF10158LOH1CR1245860.03714.8
TkA02G603730PF25100DUF780956864.48.3
TkA02G603730PF15009STING_LBD721240.2511.4
TkA02G603730PF24497MIT_ATG11031290.2912.0
TkA02G603730PF30877RSRC11161290.1213.1
TkA02G603730PF29011DDB_G0280785_1st_TPR1221570.1912.6
TkA02G603730PF30877RSRC11882220.1213.1
TkA02G603730PF25100DUF78091882264.48.3
TkA02G603730PF24497MIT_ATG11952220.2912.0
TkA02G603730PF15009STING_LBD1992280.2511.4
TkA02G603730PF29011DDB_G0280785_1st_TPR2022410.1912.6
TkA02G603730PF10158LOH1CR122102190.03714.8
TkA02G603730PF25100DUF78092862924.48.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P27323Arabidopsis thalianasp|P27323|HS901_ARATH Heat shock protein 90-191.100%Swiss-ProtHigh
Q69QQ6Oryza sativa subsp. japonicasp|Q69QQ6|HSP82_ORYSJ Heat shock protein 81-284.900%Swiss-ProtHigh

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