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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G578600
Reference: TK1151 Chr: Chr02 Coordinates: 149251205-149255415 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2895 bp · TkA02G578600|TK1151|cDNA

TTTCTTGCATTAGAGGGGTTCCGGTATTTTTAAAAGAACATGTTAATCTTACGACGACGTTGTACCTCTTTATGCCCGCTGCACGCCTGCACACATTAAGCAACCAAAAACAGGAGGGATTCACCGGCCGGCGATTTGAACTTCACCCAAAGTAACCAGTGTGTGAACGTCAAAGAGACAGGAAGACTCCGGCGAGTGGTACCAAAAATGAGGTTCGGTTTCGACACACCGGAACCCAGCAGCAAAAAAGCCCTAACAAC...

CDS

Download CDS FASTA

2430 bp · TkA02G578600|TK1151|CDS

ATGAGGTTCGGTTTCGACACACCGGAACCCAGCAGCAAAAAAGCCCTAACAACACAGTCTCAGTCACGGTCGCCGACCTCCGCTACTCCGACGAATGAAGAAGTGGAATGGGTTCCTCTTCAGAACCATCCAATTTTCTCCAATGCCACGGCCGCCCATTCATCGAATGACGTCTCGAAGAAACGAAACCTCATGGCTTGGGACGGAGCTTCTCGCCTCTACTACTGGGACATAAGTACGCAATCCCTACATCGAATTTC...

Protein

Download Protein FASTA

809 aa · TkA02G578600|TK1151|PROTEIN

MRFGFDTPEPSSKKALTTQSQSRSPTSATPTNEEVEWVPLQNHPIFSNATAAHSSNDVSKKRNLMAWDGASRLYYWDISTQSLHRISLRFGEPDPTYVLAASPSKVMRADVELSFMVDRITINRRGSALLLEGSDGIRVMDLYGKPSSKDSAIICRTVSIGSDVYFNTNNAIRTLKVSWHPYSDTHLGILSSDSVFRLYDLSSANEQPEQEYYLQPVDRGRSRNASSICPVDFSFGGDHLWDRFSVFILFSDGSVYILCP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G578600
TK1151 IDTkA02G578600
OH-1004 IDLXL04_012248
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G578600
LocationChr02:149251205-149255415 (-)
DescriptionSimilar to NUP88: Nuclear pore complex protein NUP88
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g05680 Involved in the regulation of exportin-mediated nuclear protein export.
Nuclear pore complex component MOS7/Nup88 is required for innate immunity and nuclear accumulation of defense regulators in Arabidopsis.2009 · DOI: 10.1105/tpc.108.064519

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_012248 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000055 ribosomal large subunit export from nucleus Biological Process
GO:0000056 ribosomal small subunit export from nucleus Biological Process
GO:0006406 mRNA export from nucleus Biological Process
GO:0006606 protein import into nucleus Biological Process
GO:0006611 protein export from nucleus Biological Process
GO:0009627 systemic acquired resistance Biological Process
GO:0045087 innate immune response Biological Process
GO:0005634 nucleus Cellular Component
GO:0005635 nuclear envelope Cellular Component
GO:0005643 nuclear pore Cellular Component
GO:0017056 structural constituent of nuclear pore Molecular Function
KEGG gene cross-reference
ath:AT5G05680
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.489
Rank 1 · TkA02G578600 · TK1151
Cytoplasm0.350
Rank 2 · TkA02G578600 · TK1151
Lysosome / Vacuole0.111
Rank 3 · TkA02G578600 · TK1151
Cell membrane0.081
Rank 4 · TkA02G578600 · TK1151
Golgi apparatus0.071
Rank 5 · TkA02G578600 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08614ATG1614-31 aa
PF10168Nup8840-234 aa
PF30861NUP82_beta-prop152-206 aa
PF14584DUF4446202-223 aa
PF30861NUP82_beta-prop238-271 aa
PF10168Nup88456-758 aa
PF04697Pinin_SDK_N491-517 aa
PF04521Viral_P18633-692 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G578600PF08614ATG1614318.47.2
TkA02G578600PF10168Nup88402341.1e-2796.9
TkA02G578600PF30861NUP82_beta-prop1522060.1511.1
TkA02G578600PF14584DUF44462022230.3311.7
TkA02G578600PF30861NUP82_beta-prop2382710.1511.1
TkA02G578600PF10168Nup884567581.1e-2796.9
TkA02G578600PF04697Pinin_SDK_N4915170.04314.8
TkA02G578600PF04521Viral_P186336920.2212.0
TkA02G578600PF14584DUF44466356880.3311.7
TkA02G578600PF13874Nup546367210.006717.2
TkA02G578600PF29090PEA2_C6386990.8610.4
TkA02G578600PF10234Cluap16407170.002118.2
TkA02G578600PF12795MscS_porin6477450.01116.1
TkA02G578600PF02601Exonuc_VII_L6477461.49.0
TkA02G578600PF08614ATG166566978.47.2
TkA02G578600PF24627PUMA_CC6627270.1412.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FFK6Arabidopsis thalianasp|Q9FFK6|NUP88_ARATH Nuclear pore complex protein NUP8856.300%Swiss-ProtHigh

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