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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G550390
Reference: TK1151 Chr: Chr02 Coordinates: 142008767-142013242 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2728 bp · TkA02G550390|TK1151|cDNA

ACCGAATGCTATCTTGCGGAATGGATAACGGTAATCCCACCAGATAAGAGAGACCCCCGAAGCTTCTCTCTCCTCCTTCCCAGTCATCACTCTTCCATGGCGCTTCTGCAATCTGCACCTTCTACTAGCGGTAGTTCTACACAATCACCATTAACAAACCGCCCTCTCATCCACACTCCCTTCATATTCCCCTCCACTTCCTTCAAATTACCCCCAATTTCTACTAACTACTCCCTTAAGTCTAAGCACAGCAACTCTCG...

CDS

Download CDS FASTA

2394 bp · TkA02G550390|TK1151|CDS

ATGGCGCTTCTGCAATCTGCACCTTCTACTAGCGGTAGTTCTACACAATCACCATTAACAAACCGCCCTCTCATCCACACTCCCTTCATATTCCCCTCCACTTCCTTCAAATTACCCCCAATTTCTACTAACTACTCCCTTAAGTCTAAGCACAGCAACTCTCGTTTCCGCATTCGTGCATCTGCAACTCTTGAATCCACCAATGGCGCCGCCACCATCACCGTTGGACCTGATAGTCTCTCTTCCACCGTCAACACCAG...

Protein

Download Protein FASTA

797 aa · TkA02G550390|TK1151|PROTEIN

MALLQSAPSTSGSSTQSPLTNRPLIHTPFIFPSTSFKLPPISTNYSLKSKHSNSRFRIRASATLESTNGAATITVGPDSLSSTVNTSGIPYGRQYFPLAAVVGQDAIKTALLLGAIDREIGGIAISGKRGTAKTVMARGLHAILPPIDVVVGSTSNADPACREEIAMFLRNQWSNNKLCFTYNSQRWEDGLADRVEYDSAGNVKTQVVKSPFVQIPLGVTEDRLIGSVDVEESIKSGTTVFQPGLLAEAHRGVLYVDEIN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G550390
TK1151 IDTkA02G550390
OH-1004 IDLXL04_010303
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)36.800
Protein coverage (%)TK1151 41.280 / OH-1004 71.934
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G550390
LocationChr02:142008767-142013242 (+)
DescriptionSimilar to CHLI: Magnesium-chelatase subunit ChlI, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g08520 Involved in chlorophyll biosynthesis.
Integrating the genetic and physical maps of Arabidopsis thaliana: identification of mapped alleles of cloned essential (EMB) genes.2009 · DOI: 10.1371/journal.pone.0007386
Roles of the different components of magnesium chelatase in abscisic acid signal transduction.2012 · DOI: 10.1007/s11103-012-9965-3

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: B8AMB8 Involved in chlorophyll biosynthesis. No verified direct reference in this release
Os03g0811100 Involved in chlorophyll biosynthesis.
Rice Chlorina-1 and Chlorina-9 encode ChlD and ChlI subunits of Mg-chelatase, a key enzyme for chlorophyll synthesis and chloroplast development.2006 · DOI: 10.1007/s11103-006-9024-z
C-terminal residues of oryza sativa GUN4 are required for the activation of the ChlH subunit of magnesium chelatase in chlorophyll synthesis.2012 · DOI: 10.1016/j.febslet.2011.12.026
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010303 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0015979 photosynthesis Biological Process
GO:0015995 chlorophyll biosynthetic process Biological Process
GO:0005829 cytosol Cellular Component
GO:0009505 plant-type cell wall Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009536 plastid Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0010007 magnesium chelatase complex Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0016851 magnesium chelatase activity Molecular Function
GO:0016887 ATP hydrolysis activity Molecular Function
KEGG gene cross-reference
ath:AT4G18480
ath:AT5G45930
dosa:Os03g0563300
gmx:100784256
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.906
Rank 1 · TkA02G550390 · TK1151
Nucleus0.066
Rank 2 · TkA02G550390 · TK1151
Mitochondrion0.062
Rank 3 · TkA02G550390 · TK1151
Cytoplasm0.051
Rank 4 · TkA02G550390 · TK1151
Peroxisome0.029
Rank 5 · TkA02G550390 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF15700DUF466731-72 aa
PF01078Mg_chelatase98-148 aa
PF00493MCM101-116 aa
PF07724AAA_2119-144 aa
PF00158Sigma54_activat123-142 aa
PF07728AAA_5125-144 aa
PF00158Sigma54_activat210-298 aa
PF07728AAA_5213-309 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G550390PF15700DUF466731723.78.5
TkA02G550390PF01078Mg_chelatase981489.5e-1245.5
TkA02G550390PF00493MCM1011160.0004220.2
TkA02G550390PF07724AAA_21191440.1812.6
TkA02G550390PF00158Sigma54_activat1231420.0001222.6
TkA02G550390PF07728AAA_51251443.9e-0524.4
TkA02G550390PF00158Sigma54_activat2102980.0001222.6
TkA02G550390PF07728AAA_52133093.9e-0524.4
TkA02G550390PF00493MCM2303190.0004220.2
TkA02G550390PF01078Mg_chelatase2353089.5e-1245.5
TkA02G550390PF07724AAA_22442900.1812.6
TkA02G550390PF07724AAA_23453790.1812.6
TkA02G550390PF15700DUF46673644983.78.5
TkA02G550390PF17863AAA_lid_23824473.9e-1349.7
TkA02G550390PF05308Mito_fiss_reg4044923.88.3
TkA02G550390PF10152CCDC534074880.01716.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SJE1Arabidopsis thalianasp|Q9SJE1|CHLD_ARATH Magnesium-chelatase subunit ChlD, chloroplastic81.900%Swiss-ProtHigh
B8AMB8Oryza sativa subsp. indicasp|B8AMB8|CHLD_ORYSI Magnesium-chelatase subunit ChlD, chloroplastic81.900%Swiss-ProtHigh
Q6ATS0Oryza sativa subsp. japonicasp|Q6ATS0|CHLD_ORYSJ Magnesium-chelatase subunit ChlD, chloroplastic81.900%Swiss-ProtHigh

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