TkA02G540240 | RubberDandelionOmics

Gene overview

TkA02G540240

Reference: TK1151 Chr: Chr02 Coordinates: 139362011-139363618 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1426 bp · TkA02G540240|TK1151|cDNA

TTAGAATATTCGCATCCATTCACGGAAAATACGGTGTTAGTTTCTGTTATAAAAAGCACATGCGCATCCGTCTCTCCGTAACAACTACCCAACTATCAAACCAACCTAACATGAACGAGGCTCTTAACAACGATTATCAAGTCTGCGAGGAGATCGGCCGGGGTCGCTTCGGCATCGTTTACCGCTGTTATTCCACCGTCTCCGGTGACTCATTCGCCTGTAAGTCCATCGACAAACGCCTCCTCGCTGATCCCACAGAC...

CDS

Download CDS FASTA

897 bp · TkA02G540240|TK1151|CDS

ATGCGCATCCGTCTCTCCGTAACAACTACCCAACTATCAAACCAACCTAACATGAACGAGGCTCTTAACAACGATTATCAAGTCTGCGAGGAGATCGGCCGGGGTCGCTTCGGCATCGTTTACCGCTGTTATTCCACCGTCTCCGGTGACTCATTCGCCTGTAAGTCCATCGACAAACGCCTCCTCGCTGATCCCACAGACCGTGAGTGCCTACAAAAAGAACCTAAAATCCTCCATATCCTCGGCGGAAATTCTAACAT...

Protein

Download Protein FASTA

298 aa · TkA02G540240|TK1151|PROTEIN

MRIRLSVTTTQLSNQPNMNEALNNDYQVCEEIGRGRFGIVYRCYSTVSGDSFACKSIDKRLLADPTDRECLQKEPKILHILGGNSNIVQIHRLYEEENYLHMIIDLCDTPDLFDRISKQAEVFSESEAASIFSQLILAISYCHRLGIAHRDIKPDNVLFDSRENLKLADFGSAEWFGMNERRTMTGVVGTPYYVAPEVLSGREYNEKVDVWSAGVILYIMLAGVPPFYGETPAETFEAVLRGNLRFPTRLFRNVSPEAKD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G540240`
TK1151 ID	TkA02G540240
OH-1004 ID	LXL04_012750
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.700
Protein coverage (%)	TK1151 95.973 / OH-1004 95.017 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G540240

Location Chr02:139362011-139363618 (-)

Description Similar to PPCK1: Phosphoenolpyruvate carboxylase kinase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g08650`	Calcium-independent kinase involved in light-dependent phosphoenolpyruvate carboxylase phosphorylation.	No verified direct reference in this release
`At3g04530`	Calcium-independent kinase involved in light-dependent phosphoenolpyruvate carboxylase phosphorylation.	No verified direct reference in this release
`At1g61950`	May play a role in signal transduction pathways that involve calcium as a second messenger.	No verified direct reference in this release
`At4g04720`	May play a role in signal transduction pathways that involve calcium as a second messenger.	No verified direct reference in this release
`At1g50700`	Ca(2+)-dependent protein kinase.	THI1, a Thiamine Thiazole Synthase, Interacts with Ca2+-Dependent Protein Kinase CPK33 and Modulates the S-Type Anion Channels and Stomatal Closure in Arabidopsis.2016 · DOI: 10.1104/pp.15.01649

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012750 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0016036 cellular response to phosphate starvation Biological Process

GO:0035556 intracellular signal transduction Biological Process

GO:0046898 response to cycloheximide Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0004672 protein kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G08650

ath:AT1G61950

ath:AT1G76040

ath:AT3G04530

ath:AT4G04720

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.602

Rank 1 · TkA02G540240 · TK1151

Nucleus0.552

Rank 2 · TkA02G540240 · TK1151

Cell membrane0.062

Rank 3 · TkA02G540240 · TK1151

Mitochondrion0.042

Rank 4 · TkA02G540240 · TK1151

Endoplasmic reticulum0.037

Rank 5 · TkA02G540240 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase26-285 aa

PF07714PK_Tyr_Ser-Thr28-280 aa

PF12330Haspin_kinase33-172 aa

PF14045YIEGIA66-122 aa

PF17667Pkinase_fungal72-101 aa

PF03109ABC1105-185 aa

PF06293Kdo106-167 aa

PF14531Kinase-like129-273 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G540240	`PF00069`	Pkinase	26	285	5.2e-73	246.4
TkA02G540240	`PF07714`	PK_Tyr_Ser-Thr	28	280	5.5e-31	108.5
TkA02G540240	`PF12330`	Haspin_kinase	33	172	0.015	15.1
TkA02G540240	`PF14045`	YIEGIA	66	122	0.37	10.3
TkA02G540240	`PF17667`	Pkinase_fungal	72	101	0.03	13.8
TkA02G540240	`PF03109`	ABC1	105	185	0.023	14.6
TkA02G540240	`PF06293`	Kdo	106	167	0.015	15.4
TkA02G540240	`PF14531`	Kinase-like	129	273	6.5e-06	26.3
TkA02G540240	`PF17667`	Pkinase_fungal	144	212	0.03	13.8
TkA02G540240	`PF01636`	APH	144	173	0.068	13.6
TkA02G540240	`PF05445`	Pox_ser-thr_kin	144	167	0.31	10.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SPK4`	Arabidopsis thaliana	sp\|Q9SPK4\|PPCK1_ARATH Phosphoenolpyruvate carboxylase kinase 1	58.000%	Swiss-Prot	High
`Q93VK0`	Arabidopsis thaliana	sp\|Q93VK0\|PPCK2_ARATH Phosphoenolpyruvate carboxylase kinase 2	54.700%	Swiss-Prot	High
`Q1PFH8`	Arabidopsis thaliana	sp\|Q1PFH8\|CDPKJ_ARATH Calcium-dependent protein kinase 19	44.700%	Swiss-Prot	Medium
`Q9ZSA2`	Arabidopsis thaliana	sp\|Q9ZSA2\|CDPKL_ARATH Calcium-dependent protein kinase 21	43.600%	Swiss-Prot	Medium
`Q9C6P3`	Arabidopsis thaliana	sp\|Q9C6P3\|CDPKX_ARATH Calcium-dependent protein kinase 33	43.300%	Swiss-Prot	Medium

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