LXL04_012750 | RubberDandelionOmics

Gene overview

LXL04_012750

Reference: OH-1004 Chr: Chr03 Coordinates: 18125388-18126701 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

906 bp · LXL04_012750|LXL04_012750|OH1004|cDNA

ATGCGCATCCGTCTCTCCGTAACAACTACCCAACTATCAAACCAACCTAACATGAACGAGGCTCTTAACAACGATTATCAAGTCTGCGAGGAGATCGGCCGGGGTCGCTTCGGCATCGTTTACCGCTGTTATTCCACCGTCTCCGGTGACTCATTCGCCTGTAAGTCCATCGACAAACGCCTCCTCGCTGATCCCACAGACCGTGAGTGCCTACAGAAAGAACCTAAAATCCTCCATATCCTCGGCGGAAATTCTAACAT...

CDS

Download CDS FASTA

906 bp · LXL04_012750|LXL04_012750|OH1004|CDS

ATGCGCATCCGTCTCTCCGTAACAACTACCCAACTATCAAACCAACCTAACATGAACGAGGCTCTTAACAACGATTATCAAGTCTGCGAGGAGATCGGCCGGGGTCGCTTCGGCATCGTTTACCGCTGTTATTCCACCGTCTCCGGTGACTCATTCGCCTGTAAGTCCATCGACAAACGCCTCCTCGCTGATCCCACAGACCGTGAGTGCCTACAGAAAGAACCTAAAATCCTCCATATCCTCGGCGGAAATTCTAACAT...

Protein

Download Protein FASTA

301 aa · LXL04_012750|LXL04_012750|OH1004|PROTEIN

MRIRLSVTTTQLSNQPNMNEALNNDYQVCEEIGRGRFGIVYRCYSTVSGDSFACKSIDKRLLADPTDRECLQKEPKILHILGGNSNIVQIHRLYEEENYLHMIIDLCDTPDLFDRISKQAEVFSESEAASIFSQLILAISYCHRLGIAHRDIKPDNVLFDSRENLKLADFGSAEWFGMNERRTMTGVVGTPYYVAPEVLSGREYNEKVDVWSAGVILYIMLAGVPPFYGETPAETFEAVLRGNLRFPTRLFRNVSPEAKD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_012750`
TK1151 ID	TkA02G540240
OH-1004 ID	LXL04_012750
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.700
Protein coverage (%)	TK1151 95.973 / OH-1004 95.017 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_012750

Location Chr03:18125388-18126701 (+)

Description Similar to PPCK1: Phosphoenolpyruvate carboxylase kinase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g08650`	Calcium-independent kinase involved in light-dependent phosphoenolpyruvate carboxylase phosphorylation.	No verified direct reference in this release
`At3g04530`	Calcium-independent kinase involved in light-dependent phosphoenolpyruvate carboxylase phosphorylation.	No verified direct reference in this release
`At1g61950`	May play a role in signal transduction pathways that involve calcium as a second messenger.	No verified direct reference in this release
`At1g76040`	May play a role in signal transduction pathways that involve calcium as a second messenger.	No verified direct reference in this release
`At4g04720`	May play a role in signal transduction pathways that involve calcium as a second messenger.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012750 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0016036 cellular response to phosphate starvation Biological Process

GO:0035556 intracellular signal transduction Biological Process

GO:0046898 response to cycloheximide Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0004672 protein kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G08650

ath:AT1G61950

ath:AT1G76040

ath:AT3G04530

ath:AT4G04720

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.608

Rank 1 · LXL04_012750 · OH-1004

Nucleus0.509

Rank 2 · LXL04_012750 · OH-1004

Cell membrane0.063

Rank 3 · LXL04_012750 · OH-1004

Mitochondrion0.051

Rank 4 · LXL04_012750 · OH-1004

Endoplasmic reticulum0.041

Rank 5 · LXL04_012750 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase26-285 aa

PF07714.24PK_Tyr_Ser-Thr28-280 aa

PF14531.13Kinase-like129-273 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_012750	`PF00069.32`	Pkinase	26	285	5.4e-73	246.3
LXL04_012750	`PF07714.24`	PK_Tyr_Ser-Thr	28	280	5.7e-31	108.5
LXL04_012750	`PF14531.13`	Kinase-like	129	273	6.7e-06	26.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SPK4`	Arabidopsis thaliana	Phosphoenolpyruvate carboxylase kinase 1	58.113%	Swiss-Prot	strong database homology
`Q93VK0`	Arabidopsis thaliana	Phosphoenolpyruvate carboxylase kinase 2	55.431%	Swiss-Prot	strong database homology
`Q1PFH8`	Arabidopsis thaliana	Calcium-dependent protein kinase 19	44.444%	Swiss-Prot	moderate database homology
`Q8RWL2`	Arabidopsis thaliana	Calcium-dependent protein kinase 29	45.627%	Swiss-Prot	moderate database homology
`Q9ZSA2`	Arabidopsis thaliana	Calcium-dependent protein kinase 21	44.238%	Swiss-Prot	moderate database homology

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