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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G511150
Reference: TK1151 Chr: Chr02 Coordinates: 131248895-131253660 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2146 bp · TkA02G511150|TK1151|cDNA

CAACGACAGCGTTATCATCAAGCGGCAGTGACCAAATTGGGGTTCAACTTTATAGCCATCAACTATTAGAAAATGGCGGGAAAATAGGACATACAGTCCAGCGACACCGCCGCGTTTGAAATCCTAGGAGAAGAAGAATGGAGGCAGAACCAAAACCATCGTCGGAGGAGGCGCCGACTTGCTGGAGAAAAGAATTGGACACCTACCTCAAGAGGCTCCAATCTCTTCTATTCGGTGCGGACACAGCTATCGAGAAGCGA...

CDS

Download CDS FASTA

1938 bp · TkA02G511150|TK1151|CDS

ATGGAGGCAGAACCAAAACCATCGTCGGAGGAGGCGCCGACTTGCTGGAGAAAAGAATTGGACACCTACCTCAAGAGGCTCCAATCTCTTCTATTCGGTGCGGACACAGCTATCGAGAAGCGAGATTACTCTTATGCTCAACTACTCTTACTCCATCTCATCGGCTTTCTAGATTCTCGGACCCTCACCGACGACGACGAAGCCTTCATTCGACCAATTCGCCGTGAAGCCCTCTCGAAACTGGAATCCGCTAGTCAAGC...

Protein

Download Protein FASTA

645 aa · TkA02G511150|TK1151|PROTEIN

MEAEPKPSSEEAPTCWRKELDTYLKRLQSLLFGADTAIEKRDYSYAQLLLLHLIGFLDSRTLTDDDEAFIRPIRREALSKLESASQALIPDSDRQAFEQAGKDPGVTFRKQGDLNIEKIKQSKYFKALLQHSKGDTLNEDDEPQKKEDIISKTSKVTLHGKSTTCISRTNNNMHNNSIHSVGNGLKDCNLLNVDEERTNGSYFRPKRSRMEIHSPKDETVISPSSNNKPDTNVTSNGFVTARTKLEMDVRQKRGLAGSPN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G511150
TK1151 IDTkA02G511150
OH-1004 IDLXL04_013216
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.400
Protein coverage (%)TK1151 98.760 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G511150
LocationChr02:131248895-131253660 (+)
DescriptionSimilar to FIGL1: ATPase family AAA domain-containing protein FIGL1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g27120 Involved in DNA double-strand break (DSB) repair via homologous recombination (HR).
AAA-ATPase FIDGETIN-LIKE 1 and Helicase FANCM Antagonize Meiotic Crossovers by Distinct Mechanisms.2015 · DOI: 10.1371/journal.pgen.1005369

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_013216 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006281 DNA repair Biological Process
GO:0006310 DNA recombination Biological Process
GO:0007140 male meiotic nuclear division Biological Process
GO:0010569 regulation of double-strand break repair via homologous recombination Biological Process
GO:0033687 osteoblast proliferation Biological Process
GO:0035825 homologous recombination Biological Process
GO:0036297 interstrand cross-link repair Biological Process
GO:0045128 negative regulation of reciprocal meiotic recombination Biological Process
GO:0046034 ATP metabolic process Biological Process
GO:0051013 microtubule severing Biological Process
GO:0051726 regulation of cell cycle Biological Process
GO:0071479 cellular response to ionizing radiation Biological Process
KEGG gene cross-reference
ath:AT3G27120
hsa:63979
mmu:60530
rno:289777
xtr:100124890
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.518
Rank 1 · TkA02G511150 · TK1151
Cytoplasm0.397
Rank 2 · TkA02G511150 · TK1151
Cell membrane0.097
Rank 3 · TkA02G511150 · TK1151
Endoplasmic reticulum0.045
Rank 4 · TkA02G511150 · TK1151
Mitochondrion0.041
Rank 5 · TkA02G511150 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24347FIGL1_N14-86 aa
PF17862AAA_lid_367-76 aa
PF13191AAA_1676-97 aa
PF13481AAA_25380-406 aa
PF13191AAA_16383-417 aa
PF06068TIP49384-441 aa
PF00005ABC_tran389-416 aa
PF24883NPHP3_N390-465 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G511150PF24347FIGL1_N14861.2e-33115.5
TkA02G511150PF17862AAA_lid_367763e-0937.0
TkA02G511150PF13191AAA_1676970.001719.6
TkA02G511150PF13481AAA_253804060.211.9
TkA02G511150PF13191AAA_163834170.001719.6
TkA02G511150PF06068TIP493844410.0002421.1
TkA02G511150PF00005ABC_tran3894160.08414.2
TkA02G511150PF24883NPHP3_N3904650.1513.0
TkA02G511150PF13401AAA_223924300.0003321.7
TkA02G511150PF01078Mg_chelatase3924110.02614.6
TkA02G511150PF00004AAA3935231.1e-39136.6
TkA02G511150PF07728AAA_53935141e-0629.5
TkA02G511150PF05496RuvB_N3934620.0003920.9
TkA02G511150PF13173AAA_143934600.01116.5
TkA02G511150PF01695IstB_IS213934580.2411.6
TkA02G511150PF13191AAA_164384610.001719.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4JEX5Arabidopsis thalianasp|F4JEX5|FIGL1_ARATH ATPase family AAA domain-containing protein FIGL165.100%Swiss-ProtHigh

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