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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G498240
Reference: TK1151 Chr: Chr02 Coordinates: 127640873-127645375 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3395 bp · TkA02G498240|TK1151|cDNA

CGGAAACAACTCGACAAGCCTCGCGCTCTCTTGAACCATCCTCTTCCTTCTTCTTATATATTAACTGTGTCAACTCTCTCCTCCACTCATCACTTCACTCACAAGTTTTGCCTTGGAACTTACCAGAACCCTTATCTTTCCCGTATTCCCACTCAATCCCCTCTACTTTTTCATTCCTTGATCTCTCCCAATAACCTTGATTTACTGGTCACTCGACTCACACTTCTTCCGTTACCGATGGCAACGACGGCGTCCTTCTC...

CDS

Download CDS FASTA

3186 bp · TkA02G498240|TK1151|CDS

CGGAAACAACTCGACAAGCCTCGCGCTCTCTTGAACCATCCTCTTCCTTCTTCTTATATATTAACTGTGTCAACTCTCTCCTCCACTCATCACTTCACTCACAAGTTTTGCCTTGGAACTTACCAGAACCCTTATCTTTCCCGTATTCCCACTCAATCCCCTCTACTTTTTCATTCCTTGATCTCTCCCAATAACCTTGATTTACTGGTCACTCGACTCACACTTCTTCCGTTACCGATGGCAACGACGGCGTCCTTCTC...

Protein

Download Protein FASTA

1061 aa · TkA02G498240|TK1151|PROTEIN

RKQLDKPRALLNHPLPSSYILTVSTLSSTHHFTHKFCLGTYQNPYLSRIPTQSPLLFHSLISPNNLDLLVTRLTLLPLPMATTASFSGVRIHAPSSTCIDRTTLFAQPSVSFSSFSKPRRTTLRSLKLRSRSNDVLLRTRTGDRFGGKSSRSFVVRCDASSNGRITQQEFTEMAWQAIVSSPEVAKENKHQIVETEHLMKALLEQKNGLARRIFSKAGIDNTRLLEATDKYIQRQPKVIGESAGSMLGRDLEALMQRARD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G498240
TK1151 IDTkA02G498240
OH-1004 IDLXL04_013400
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.900
Protein coverage (%)TK1151 99.057 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G498240
LocationChr02:127640873-127645375 (-)
DescriptionSimilar to CLPB3: Chaperone protein ClpB3, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g15450 Molecular chaperone essential for chloroplast development and seedling viability.
An Arabidopsis chloroplast-targeted Hsp101 homologue, APG6, has an essential role in chloroplast development as well as heat-stress response.2006 · DOI: 10.1111/j.1365-313x.2006.02873.x
The Arabidopsis ClpB/Hsp100 family of proteins: chaperones for stress and chloroplast development.2007 · DOI: 10.1111/j.1365-313x.2006.02940.x
At2g25140 Molecular chaperone that does not seem to be involved in heat stress response or tolerance.
The Arabidopsis ClpB/Hsp100 family of proteins: chaperones for stress and chloroplast development.2007 · DOI: 10.1111/j.1365-313x.2006.02940.x

Rice

Reference gene IDPossible functionPapers / DOI
Os03g0426900 Molecular chaperone that may play a role in chloroplast development. No verified direct reference in this release
Os02g0181900 Molecular chaperone that may not be involved in heat stress response or tolerance. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_013400 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009408 response to heat Biological Process
GO:0009658 chloroplast organization Biological Process
GO:0034605 cellular response to heat Biological Process
GO:0042026 protein refolding Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009532 plastid stroma Cellular Component
GO:0009536 plastid Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0009941 chloroplast envelope Cellular Component
GO:0005524 ATP binding Molecular Function
KEGG gene cross-reference
ana:alr5084
ath:AT2G25140
ath:AT5G15450
dosa:Os02g0181900
dosa:Os03g0426900
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.943
Rank 1 · TkA02G498240 · TK1151
Mitochondrion0.074
Rank 2 · TkA02G498240 · TK1151
Cytoplasm0.032
Rank 3 · TkA02G498240 · TK1151
Nucleus0.026
Rank 4 · TkA02G498240 · TK1151
Peroxisome0.023
Rank 5 · TkA02G498240 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13207AAA_17166-232 aa
PF02861Clp_N169-292 aa
PF23735KIF9185-271 aa
PF00308Bac_DnaA213-293 aa
PF01656CbiA213-298 aa
PF02861Clp_N285-317 aa
PF14712Snapin_Pallidin285-363 aa
PF13191AAA_16344-394 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G498240PF13207AAA_171662320.06714.2
TkA02G498240PF02861Clp_N1692924.5e-35121.3
TkA02G498240PF23735KIF91852713.18.7
TkA02G498240PF00308Bac_DnaA2132930.001519.5
TkA02G498240PF01656CbiA2132980.04514.4
TkA02G498240PF02861Clp_N2853174.5e-35121.3
TkA02G498240PF14712Snapin_Pallidin2853630.006517.6
TkA02G498240PF13191AAA_163443942.7e-0835.3
TkA02G498240PF00158Sigma54_activat3454461.6e-0938.4
TkA02G498240PF25201nSTAND63453870.04314.6
TkA02G498240PF01637ATPase_23473820.005217.3
TkA02G498240PF23569NBD_SMAX13494512e-0628.5
TkA02G498240PF06414Zeta_toxin3493871.4e-0525.4
TkA02G498240PF20720nSTAND33513892.7e-0731.1
TkA02G498240PF02367TsaE3543870.004117.8
TkA02G498240PF20030bpMoxR3573980.01615.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LF37Arabidopsis thalianasp|Q9LF37|CLPB3_ARATH Chaperone protein ClpB3, chloroplastic86.800%Swiss-ProtHigh
Q8VYJ7Arabidopsis thalianasp|Q8VYJ7|CLPB4_ARATH Chaperone protein ClpB4, mitochondrial67.200%Swiss-ProtHigh
Q75GT3Oryza sativa subsp. japonicasp|Q75GT3|CLPB2_ORYSJ Chaperone protein ClpB2, chloroplastic86.200%Swiss-ProtHigh
Q0E3C8Oryza sativa subsp. japonicasp|Q0E3C8|CLPB3_ORYSJ Chaperone protein ClpB3, mitochondrial68.900%Swiss-ProtHigh

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