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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G494380
Reference: TK1151 Chr: Chr02 Coordinates: 126531642-126532709 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1068 bp · TkA02G494380|TK1151|cDNA

ATGTCAAATTCAGAACACAACACAGATCTAGACTCCTACCAAGATGCTTGTCAAACGGATCCGGAGCTCCAGTCCTTCGATTCCACCCTCCAAGACCGCACCAGTAGAGTAATTAACACTCTCGCCGACGGCGTCGAGGTCCGTTCCCTTACCCTTGACTCCCTCCGTGAAGTCACCGGAAGTTTACTAGACATGAATCAGCAAGTTGTCAAAGTTATACTTGAATGCAAAAAGGACATTTGGGACAATGACCAATTGTT...

CDS

Download CDS FASTA

1068 bp · TkA02G494380|TK1151|CDS

ATGTCAAATTCAGAACACAACACAGATCTAGACTCCTACCAAGATGCTTGTCAAACGGATCCGGAGCTCCAGTCCTTCGATTCCACCCTCCAAGACCGCACCAGTAGAGTAATTAACACTCTCGCCGACGGCGTCGAGGTCCGTTCCCTTACCCTTGACTCCCTCCGTGAAGTCACCGGAAGTTTACTAGACATGAATCAGCAAGTTGTCAAAGTTATACTTGAATGCAAAAAGGACATTTGGGACAATGACCAATTGTT...

Protein

Download Protein FASTA

355 aa · TkA02G494380|TK1151|PROTEIN

MSNSEHNTDLDSYQDACQTDPELQSFDSTLQDRTSRVINTLADGVEVRSLTLDSLREVTGSLLDMNQQVVKVILECKKDIWDNDQLFSLVKEYFEISIQTLDFCSCLENCLKDARSTLSFLQIAINQYDADTNHLNTLDQLKQFKEFDSPFSVEFFELFQSVYKKQLAMLKKLQIEKWKVDKKMKSTKTWRRLSNVIFVTAFSTVLICSVVAAAIAAPPVVTALAAAAAVPLGSMGKWVNSLWKKYEREFKDQREMISAM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G494380
TK1151 IDTkA02G494380
OH-1004 IDLXL04_013476
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)97.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G494380
LocationChr02:126531642-126532709 (-)
DescriptionSimilar to At4g34320: UPF0496 protein At4g34320
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g34320 UPF0496 protein At4g34320. No verified direct reference in this release
At2g18630 UPF0496 protein At2g18630. No verified direct reference in this release
At5g66675 UPF0496 protein At5g66675. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: A2XDK8 UPF0496 protein 1. No verified direct reference in this release
Os03g0199100 UPF0496 protein 1. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_013476 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005634 nucleus Cellular Component
GO:0005777 peroxisome Cellular Component
GO:0016020 membrane Cellular Component
KEGG gene cross-reference
ath:AT2G18630
ath:AT4G34320
ath:AT5G66675
dosa:Os03g0199100
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.433
Rank 1 · TkA02G494380 · TK1151
Cell membrane0.402
Rank 2 · TkA02G494380 · TK1151
Nucleus0.222
Rank 3 · TkA02G494380 · TK1151
Endoplasmic reticulum0.067
Rank 4 · TkA02G494380 · TK1151
Lysosome / Vacuole0.067
Rank 5 · TkA02G494380 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24829Phage_connect_210-84 aa
PF05633ROH1-like17-130 aa
PF16387DUF499621-35 aa
PF05055DUF67723-347 aa
PF24829Phage_connect_290-134 aa
PF16475DUF505297-138 aa
PF17279DUF5344108-146 aa
PF20990DUF2207_C121-230 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G494380PF24829Phage_connect_210840.113.6
TkA02G494380PF05633ROH1-like171304.3e-0936.6
TkA02G494380PF16387DUF499621350.08914.0
TkA02G494380PF05055DUF677233472.5e-108362.7
TkA02G494380PF24829Phage_connect_2901340.113.6
TkA02G494380PF16475DUF5052971380.7610.0
TkA02G494380PF17279DUF53441081460.08414.1
TkA02G494380PF20990DUF2207_C1212300.4111.0
TkA02G494380PF04069OpuAC1231830.07113.4
TkA02G494380PF24423OVT11281380.04714.8
TkA02G494380PF08397IMD1371891.09.5
TkA02G494380PF15011CA109-like1571920.0314.7
TkA02G494380PF24829Phage_connect_21671940.113.6
TkA02G494380PF29734PM11011822560.02215.4
TkA02G494380PF16475DUF50521842000.7610.0
TkA02G494380PF04206MtrE1972530.1512.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SYZ7Arabidopsis thalianasp|Q9SYZ7|U496A_ARATH UPF0496 protein At4g3432054.100%Swiss-ProtHigh
Q56XQ0Arabidopsis thalianasp|Q56XQ0|U496I_ARATH UPF0496 protein At2g1863049.400%Swiss-ProtMedium
Q8GW16Arabidopsis thalianasp|Q8GW16|U496H_ARATH UPF0496 protein At5g6667545.300%Swiss-ProtMedium
A2XDK8Oryza sativa subsp. indicasp|A2XDK8|U496A_ORYSI UPF0496 protein 152.800%Swiss-ProtHigh
Q10QE9Oryza sativa subsp. japonicasp|Q10QE9|U496A_ORYSJ UPF0496 protein 152.800%Swiss-ProtHigh

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