TkA02G440390 | RubberDandelionOmics

Gene overview

TkA02G440390

Reference: TK1151 Chr: Chr02 Coordinates: 111906890-111908205 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

438 bp · TkA02G440390|TK1151|cDNA

ATGCTTTCATCGGAAACCTCGGTCTCTGTGGACCTCCTCTTGACCGTTGTCGGGTTCAAGAACCCGACAACCAGGTCTGAGCGAGCATCAGTGATCATAATCTCGGCTATTTCCACAATAGCCGCGATCGCACTGATGTTTTTCGCAGCAGTGTTATTCTCAGAAGAAGAAACCGGTCCGGTTCGTTTAAAAGCCGGAGACGGGAGCAGCACTGACTACTCTTCGTCATTTTCTTCACGCGCCCAAAGAAGAAGACCGCT...

CDS

Download CDS FASTA

438 bp · TkA02G440390|TK1151|CDS

ATGCTTTCATCGGAAACCTCGGTCTCTGTGGACCTCCTCTTGACCGTTGTCGGGTTCAAGAACCCGACAACCAGGTCTGAGCGAGCATCAGTGATCATAATCTCGGCTATTTCCACAATAGCCGCGATCGCACTGATGTTTTTCGCAGCAGTGTTATTCTCAGAAGAAGAAACCGGTCCGGTTCGTTTAAAAGCCGGAGACGGGAGCAGCACTGACTACTCTTCGTCATTTTCTTCACGCGCCCAAAGAAGAAGACCGCT...

Protein

Download Protein FASTA

145 aa · TkA02G440390|TK1151|PROTEIN

MLSSETSVSVDLLLTVVGFKNPTTRSERASVIIISAISTIAAIALMFFAAVLFSEEETGPVRLKAGDGSSTDYSSSFSSRAQRRRPLFFKRGSTKQDFRWEDIMEATNNLSDEFIIGSGGSGTIYGPSFYPVRSWPLKGYHGKTM

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G440390`
TK1151 ID	TkA02G440390
OH-1004 ID	LXL04_014306
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	86.900
Protein coverage (%)	TK1151 68.276 / OH-1004 7.717 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G440390

Location Chr02:111906890-111908205 (-)

Description Similar to GSO1: LRR receptor-like serine/threonine-protein kinase GSO1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g20140`	Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.	GASSHO1 and GASSHO2 encoding a putative leucine-rich repeat transmembrane-type receptor kinase are essential for the normal development of the epidermal surface in Arabidopsis embryos.2008 · DOI: 10.1111/j.1365-313x.2007.03395.x The receptor-like kinases GSO1 and GSO2 together regulate root growth in Arabidopsis through control of cell division and cell fate specification.2014 · DOI: 10.1002/dvdy.24066 A peptide hormone required for Casparian strip diffusion barrier formation in Arabidopsis roots.2017 · DOI: 10.1126/science.aai9057
`At5g44700`	Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.	GASSHO1 and GASSHO2 encoding a putative leucine-rich repeat transmembrane-type receptor kinase are essential for the normal development of the epidermal surface in Arabidopsis embryos.2008 · DOI: 10.1111/j.1365-313x.2007.03395.x The receptor-like kinases GSO1 and GSO2 together regulate root growth in Arabidopsis through control of cell division and cell fate specification.2014 · DOI: 10.1002/dvdy.24066 A peptide hormone required for Casparian strip diffusion barrier formation in Arabidopsis roots.2017 · DOI: 10.1126/science.aai9057

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014306 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009553 embryo sac development Biological Process

GO:0009611 response to wounding Biological Process

GO:0042659 regulation of cell fate specification Biological Process

GO:0045184 establishment of protein localization Biological Process

GO:0051302 regulation of cell division Biological Process

GO:0055075 potassium ion homeostasis Biological Process

GO:0090708 specification of plant organ axis polarity Biological Process

GO:0160073 Casparian strip assembly Biological Process

GO:2000067 regulation of root morphogenesis Biological Process

GO:2000280 regulation of root development Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT4G20140

ath:AT5G44700

ath:AT5G63930

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.602

Rank 1 · TkA02G440390 · TK1151

Endoplasmic reticulum0.158

Rank 2 · TkA02G440390 · TK1151

Nucleus0.139

Rank 3 · TkA02G440390 · TK1151

Cytoplasm0.122

Rank 4 · TkA02G440390 · TK1151

Plastid0.051

Rank 5 · TkA02G440390 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17628IncD22-64 aa

PF04932Wzy_C26-137 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G440390	`PF17628`	IncD	22	64	0.12	12.8
TkA02G440390	`PF04932`	Wzy_C	26	137	0.026	15.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`C0LGQ5`	Arabidopsis thaliana	sp\|C0LGQ5\|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1	54.200%	Swiss-Prot	Medium
`Q9FIZ3`	Arabidopsis thaliana	sp\|Q9FIZ3\|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2	41.700%	Swiss-Prot	Medium

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