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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G424660
Reference: TK1151 Chr: Chr02 Coordinates: 107870767-107874682 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2241 bp · TkA02G424660|TK1151|cDNA

CGACGTCGTCTTATTACAGCTTGAGCTCATTTCGCTGGCTTCTTTTGGATCTGTGAGAGAACCAGCGGCTTTTCCTCGGCTTCACCTCTTCTTTTAGCCATCTCTAGGTTACAAAAACCACCCGGTGTCCCCTGATTTCAAAAGGCGTCCATGGTTTCGTTCCCTTTGTTTTAGATTTGTTACAATAGCTTCATTTTTTGTTTTCCTTTCTCTTCCTTACCATCGATTCCCTATTGATTTTCCGTGAAATTGTTCACACT...

CDS

Download CDS FASTA

1167 bp · TkA02G424660|TK1151|CDS

ATGGTGGACAACCTGCTGACAATGGAGATGCTAATGCTGGAAAATAGGAATTTAAGCTATGCTGATGGTCCAGTTGATATACCTCAGGACGACACCTTTCTTACAGATAATGTGCAAATAATATGCATTTGTGACACAGAGGAATGGGTATCAAACAATGATATTTTGTTGTTTTGGCAAGTGAAACCCCTTGTGCATGTCTACCAGCTTAGTGAAGAGGGACCTTGTGAAGATTTAGATGGAGATAGCCAACTTTCTAG...

Protein

Download Protein FASTA

388 aa · TkA02G424660|TK1151|PROTEIN

MVDNLLTMEMLMLENRNLSYADGPVDIPQDDTFLTDNVQIICICDTEEWVSNNDILLFWQVKPLVHVYQLSEEGPCEDLDGDSQLSSFSEWILPAKDFDRMWESLVYESGLKHWLLRYAASALLFTGKGVDPLLVAWNRIVLLHGPPGTRKTSLCKALAQKLSIRFSSRYPHSQLVEVNAHSLFSKWFSESGKLVAKFFQKIQDMVKEDNNLVFVLIDEVESLAAARNAALSGSEPLDSIRVVKALLRSFSRSKKEKCKY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G424660
TK1151 IDTkA02G424660
OH-1004 IDLXL04_009494
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)93.000
Protein coverage (%)TK1151 62.629 / OH-1004 38.268
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G424660
LocationChr02:107870767-107874682 (-)
DescriptionSimilar to PCH2: Pachytene checkpoint protein 2 homolog
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g24710 Plays a key role in chromosome recombination during meiosis.
Arabidopsis PCH2 Mediates Meiotic Chromosome Remodeling and Maturation of Crossovers.2015 · DOI: 10.1371/journal.pgen.1005372

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: A2XUN8 Plays a key role in chromosome recombination during meiosis. No verified direct reference in this release
Os04g0479000 Plays a key role in chromosome recombination during meiosis. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_009494 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006302 double-strand break repair Biological Process
GO:0007094 mitotic spindle assembly checkpoint signaling Biological Process
GO:0007129 homologous chromosome pairing at meiosis Biological Process
GO:0007130 synaptonemal complex assembly Biological Process
GO:0007131 reciprocal meiotic recombination Biological Process
GO:0007141 male meiosis I Biological Process
GO:0007144 female meiosis I Biological Process
GO:0007283 spermatogenesis Biological Process
GO:0007286 spermatid development Biological Process
GO:0042138 meiotic DNA double-strand break formation Biological Process
GO:0051026 chiasma assembly Biological Process
GO:0051598 meiotic recombination checkpoint signaling Biological Process
KEGG gene cross-reference
ath:AT4G24710
dosa:Os04g0479000
mmu:69716
rno:292206
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.277
Rank 1 · TkA02G424660 · TK1151
Endoplasmic reticulum0.245
Rank 2 · TkA02G424660 · TK1151
Nucleus0.220
Rank 3 · TkA02G424660 · TK1151
Mitochondrion0.208
Rank 4 · TkA02G424660 · TK1151
Peroxisome0.091
Rank 5 · TkA02G424660 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23563TRIP13_N12-73 aa
PF07728AAA_512-44 aa
PF01637ATPase_264-99 aa
PF20720nSTAND3138-189 aa
PF13173AAA_14138-227 aa
PF03215Rad17138-168 aa
PF24883NPHP3_N138-164 aa
PF02367TsaE138-165 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G424660PF23563TRIP13_N12731.7e-1454.5
TkA02G424660PF07728AAA_512440.05214.3
TkA02G424660PF01637ATPase_264990.1512.5
TkA02G424660PF20720nSTAND31381890.01715.5
TkA02G424660PF13173AAA_141382270.08913.5
TkA02G424660PF03215Rad171381680.1312.9
TkA02G424660PF24883NPHP3_N1381640.1612.9
TkA02G424660PF02367TsaE1381650.2811.9
TkA02G424660PF13401AAA_221392270.0001123.2
TkA02G424660PF13191AAA_161392520.0001523.0
TkA02G424660PF06068TIP491392290.008616.0
TkA02G424660PF13086AAA_111391630.1212.9
TkA02G424660PF20030bpMoxR1401650.05613.2
TkA02G424660PF00004AAA1412567.3e-1762.8
TkA02G424660PF13238AAA_181412100.02216.0
TkA02G424660PF30683AAA_RNF213_41412260.02715.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8H1F9Arabidopsis thalianasp|Q8H1F9|PCH2_ARATH Pachytene checkpoint protein 2 homolog79.800%Swiss-ProtMedium
A2XUN8Oryza sativa subsp. indicasp|A2XUN8|PCH2_ORYSI Pachytene checkpoint protein 2 homolog74.900%Swiss-ProtMedium
Q7XK25Oryza sativa subsp. japonicasp|Q7XK25|PCH2_ORYSJ Pachytene checkpoint protein 2 homolog74.900%Swiss-ProtMedium

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