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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G411290
Reference: TK1151 Chr: Chr02 Coordinates: 104621055-104625508 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2653 bp · TkA02G411290|TK1151|cDNA

GTTGTGGTCAGCAGCAACACCAGGTTTGATCTAAAGCTCTGATGCCATATCAAATACTAAAATGTTTAATAGCTTAAATATCTTCTTATTTATAGAACATATATTTATAGTATAAATCATGAACCCAAATGGGCTAGTGGCAGATTGGTTGAGGCCCATTTTGTTTTATAGCCAACTAAAGTCAGAGGAATTACAGCGGCCCAATACTGAGCGAACAAATAAAATTCCACAAGGGAGCGTTTCCAATGCCATTCAAATAT...

CDS

Download CDS FASTA

1920 bp · TkA02G411290|TK1151|CDS

ATGGATTTTATGGACATTGATCAGGTAGTGGAGGTCCCCGACACTCCAGAGAGATTTATATCAACACATAGTAATGACAGAAACACCCCTGGAACCCACAGTGATGGATCAAGTAGCTGTCGTGTGATAACTAAAGATTCCATTAATGAAACCATGAGAAATGACCCAAGAGAAAAGGGCAAATCAGTCAAATACCATGGGAGCCGAAGATTATTTGTACGCCCTGATACCAACAACAGTTCATCTACTTCCAAGAACCC...

Protein

Download Protein FASTA

639 aa · TkA02G411290|TK1151|PROTEIN

MDFMDIDQVVEVPDTPERFISTHSNDRNTPGTHSDGSSSCRVITKDSINETMRNDPREKGKSVKYHGSRRLFVRPDTNNSSSTSKNPFTTLHNAQKGESLSNSSLQNPTYRKSSSFVDLTDQNMHDRHVFEIDTLDTPVKSLGLNNTDKFGQRFDRGKGVITGGQHKVDHNSSMLTRLSRQKTLVISPHNIAKSKEVIEKHENGKVAKDLLVDIENLTTEGKISRGLKGKQTSKSSNNLLLDKHNPLKKVNLSLPDGNPR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G411290
TK1151 IDTkA02G411290
OH-1004 IDLXL04_014581
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)96.700
Protein coverage (%)TK1151 100.000 / OH-1004 89.718
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G411290
LocationChr02:104621055-104625508 (-)
DescriptionSimilar to SDIR1: E3 ubiquitin-protein ligase SDIR1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g66070 May be involved in the early steps of the plant defense signaling pathway. No verified direct reference in this release
At2g17730 Intrinsic thylakoid membrane protein that fixes RPOT2 on the stromal side of the thylakoid membrane. No verified direct reference in this release
At4g35840 Intrinsic thylakoid membrane protein that fixes RPOT2 on the stromal side of the thylakoid membrane. No verified direct reference in this release
At1g28040 RING-H2 finger protein ATL20. No verified direct reference in this release
At1g74410 May be involved in the early steps of the plant defense signaling pathway. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014581 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000578 embryonic axis specification Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0006952 defense response Biological Process
GO:0009414 response to water deprivation Biological Process
GO:0009651 response to salt stress Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process
GO:0009789 positive regulation of abscisic acid-activated signaling pathway Biological Process
GO:0010182 sugar mediated signaling pathway Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0045892 negative regulation of DNA-templated transcription Biological Process
KEGG gene cross-reference
ath:AT3G47990
ath:AT3G55530
ath:AT5G66070
hsa:51132
xla:398680
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.949
Rank 1 · TkA02G411290 · TK1151
Cytoplasm0.173
Rank 2 · TkA02G411290 · TK1151
Cell membrane0.021
Rank 3 · TkA02G411290 · TK1151
Mitochondrion0.015
Rank 4 · TkA02G411290 · TK1151
Endoplasmic reticulum0.010
Rank 5 · TkA02G411290 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16765Pim83-119 aa
PF16765Pim202-251 aa
PF17120zf-RING_16590-633 aa
PF13639zf-RING_2592-635 aa
PF12678zf-rbx1592-635 aa
PF13920zf-C3HC4_3592-638 aa
PF26148VPS18_RING_C592-623 aa
PF17123zf-RING_11593-621 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G411290PF16765Pim831190.7210.7
TkA02G411290PF16765Pim2022510.7210.7
TkA02G411290PF17120zf-RING_165906330.03414.5
TkA02G411290PF13639zf-RING_25926352.6e-1350.7
TkA02G411290PF12678zf-rbx15926351.2e-0732.5
TkA02G411290PF13920zf-C3HC4_35926387.5e-0523.2
TkA02G411290PF26148VPS18_RING_C5926230.1512.9
TkA02G411290PF17123zf-RING_115936213.2e-0937.0
TkA02G411290PF13923zf-C3HC4_25936345.6e-0936.4
TkA02G411290PF14634zf-RING_55936350.001119.7
TkA02G411290PF00097zf-C3HC45946343.1e-0834.1
TkA02G411290PF13445zf-RING_UBOX5946325.8e-0523.7
TkA02G411290PF08746zf-RING-like5946340.003218.3
TkA02G411290PF12906RINGv5946340.3311.9
TkA02G411290PF23555zf-RING_Vps415946280.4910.8
TkA02G411290PF11793FANCL_C5946300.9410.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FKX5Arabidopsis thalianasp|Q9FKX5|NIPL1_ARATH NEP1-interacting protein-like 143.300%Swiss-ProtLow
Q8GT74Arabidopsis thalianasp|Q8GT74|NIP2_ARATH NEP1-interacting protein 240.000%Swiss-ProtLow
Q8GT75Arabidopsis thalianasp|Q8GT75|NIP1_ARATH NEP1-interacting protein 153.200%Swiss-ProtLow
Q9C7E9Arabidopsis thalianasp|Q9C7E9|ATL20_ARATH RING-H2 finger protein ATL2055.600%Swiss-ProtLow
Q8LBA0Arabidopsis thalianasp|Q8LBA0|NIPL2_ARATH NEP1-interacting protein-like 242.900%Swiss-ProtLow

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