RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G285430
Reference: TK1151 Chr: Chr02 Coordinates: 72898367-72902349 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1955 bp · TkA02G285430|TK1151|cDNA

CGAGTATATGATAAAACTAATTTCAAATTTATGTTATATCTACCACCAAAATAACAGAGCCCCTAAATTGCACTCGACTGCAGAAGCTAGGGTTCGCACTTTCCCATCCAGCATCTCTGTCCGAGAATCCATATCAGCTTCCCCAATCGAATTTAATCCTCCAAAGCCCTAATCTGGTACTTGGAGAACAACTACACTTTAGATAATGGACTTCGACGAGTACGAGTACTTGGAGAAGACAGTCGACGAACCTGACACCA...

CDS

Download CDS FASTA

987 bp · TkA02G285430|TK1151|CDS

ATGCCCCTGAAGGCAACTGAATGGGATGTTTATGAGTTCTTTTCTAAAGCAGGAAAGGTGAGAGATGTGCGATTAATCATGGATAGGAATTCAAGAAGGTCGAAAGGAGTTGGGTACATTGAGTTTTATGATGCGATGTCAGTGCCAATGGCAATTGCTCTGTGTGGTCAACTACTTCTCGGGCAGCCCGTGATGGTCAAACCTTCAGAAGCTGAGAAGAATCTTGTCCAGTCAACTGCTGCAAGTGGGGCAGCTGGTGG...

Protein

Download Protein FASTA

329 aa · TkA02G285430|TK1151|PROTEIN

MPLKATEWDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALCGQLLLGQPVMVKPSEAEKNLVQSTAASGAAGGVNGPYGAVDRKLYVGNLHFNMNELQLKQIFEAFGPVEVVQLPTDPETGHCKGFGFVQFAQLEHAKAAQSLNGKLEIAGRTIKVSSVADHISAQDTGAKAADFDDDDGGGLALNAQSRVMLMAKLDRSGITSGITGAPLVNGSGPIQGMNLGAATVPILPPQIVSEPIGNPSEC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G285430
TK1151 IDTkA02G285430
OH-1004 IDLXL04_015784
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)99.700
Protein coverage (%)TK1151 100.000 / OH-1004 56.822
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G285430
LocationChr02:72898367-72902349 (+)
DescriptionSimilar to Rbm39: RNA-binding protein 39
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_015784 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000245 spliceosomal complex assembly Biological Process
GO:0000398 mRNA splicing, via spliceosome Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006357 regulation of transcription by RNA polymerase II Biological Process
GO:0006396 RNA processing Biological Process
GO:0006397 mRNA processing Biological Process
GO:0008380 RNA splicing Biological Process
GO:0031397 negative regulation of protein ubiquitination Biological Process
GO:0033120 positive regulation of RNA splicing Biological Process
GO:0045292 mRNA cis splicing, via spliceosome Biological Process
GO:0045893 positive regulation of DNA-templated transcription Biological Process
GO:0048024 regulation of mRNA splicing, via spliceosome Biological Process
KEGG gene cross-reference
hsa:55147
hsa:9584
mmu:170791
mmu:22185
spo:2542545
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.700
Rank 1 · TkA02G285430 · TK1151
Cytoplasm0.498
Rank 2 · TkA02G285430 · TK1151
Cell membrane0.055
Rank 3 · TkA02G285430 · TK1151
Endoplasmic reticulum0.033
Rank 4 · TkA02G285430 · TK1151
Lysosome / Vacuole0.027
Rank 5 · TkA02G285430 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22976RRM_102-56 aa
PF00076RRM_13-62 aa
PF08777RRM_39-23 aa
PF14605Nup35_RRM_29-51 aa
PF16842RRM_occluded12-30 aa
PF28977DUF848915-33 aa
PF16367RRM_730-55 aa
PF16367RRM_797-143 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G285430PF22976RRM_102560.003118.3
TkA02G285430PF00076RRM_13628.6e-41138.4
TkA02G285430PF08777RRM_39230.003518.1
TkA02G285430PF14605Nup35_RRM_29510.04114.5
TkA02G285430PF16842RRM_occluded12300.02315.2
TkA02G285430PF28977DUF848915330.03315.1
TkA02G285430PF16367RRM_730550.0001522.4
TkA02G285430PF16367RRM_7971430.0001522.4
TkA02G285430PF22976RRM_10981570.003118.3
TkA02G285430PF00076RRM_1991698.6e-41138.4
TkA02G285430PF28976RRM_ACIN1991550.004717.7
TkA02G285430PF16842RRM_occluded991750.02315.2
TkA02G285430PF08777RRM_31111540.003518.1
TkA02G285430PF26250RRM_RdRP1_21261580.00219.2
TkA02G285430PF29326RRM_MUD2_C1421738.9e-0729.7
TkA02G285430PF28977DUF84891501600.03315.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser