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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G072590
Reference: TK1151 Chr: Chr02 Coordinates: 18771348-18775353 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1037 bp · TkA02G072590|TK1151|cDNA

TGTCCACAAGTTTACGGGCTCTTCACTGTGAAATTAGCAGTTACATTGACACTTATTGGAGGTGTACAACATATTGATGGTTCTGGTACAAAAGTTAGAGGCGAATCCCATCTTCTCCTTGTTGGAGATCCAGGTACAGGAAAGTCTCAGTTTTTAAAATTTGCTGCTAAATTGTGTAGAAGATCTGTTATCACTACTGGACTTGGAAGCACAAGTGCTGGATTGACTGTCACAGCAGTCAAAGATGCAGGTGAATGGAT...

CDS

Download CDS FASTA

1896 bp · TkA02G072590|TK1151|CDS

ATGGACGACGATGAATCAAAGAAAACACTATCGGCTTTCTTGACGGAATATCACTCCGATCAGATCGAGTCGATCCTTCTCTCCTCCGATCATCGCCTTCATTACCCCCTTTATGTCGATTTTGCTGAAGTGATGGAGCACGATTCTCCACTTGCTCATGAGATCCTTTTCGAACCAACGAAGTACTTGCCTGTGTTCGACGAAGCAGCTACATTGGCTCAGGAGAACATGTATGGACAGACTAAGAAAAGTTGGGAGCA...

Protein

Download Protein FASTA

631 aa · TkA02G072590|TK1151|PROTEIN

MDDDESKKTLSAFLTEYHSDQIESILLSSDHRLHYPLYVDFAEVMEHDSPLAHEILFEPTKYLPVFDEAATLAQENMYGQTKKSWEHESRKEGYDRPFPTIKEFVHVRIEIRGPMLDNPGTILLFNKFSSYFMNLTAPHSLELCPSIGRVRVKHRGILLTLKGTVIRSGSIKMIEGEREYECRKCKHRFKVHPELESRNSIPKPLFCPSKVIFHSVLLPKGSCGSTSFQLLEGNKVCHDYQEIKIQESTQVLGVGAIPRS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G072590
TK1151 IDTkA02G072590
OH-1004 IDLXL04_017147
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.000
Protein coverage (%)TK1151 98.891 / OH-1004 83.311
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G072590
LocationChr02:18771348-18775353 (-)
DescriptionSimilar to MCM9: Probable DNA helicase MCM9
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g14050 Probable DNA helicase that may play a role in DNA repair during meiosis. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: B8B406 Probable DNA helicase that may play a role in DNA repair during meiosis. No verified direct reference in this release
Os06g0218500 Probable DNA helicase that may play a role in DNA repair during meiosis. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_017147 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000724 double-strand break repair via homologous recombination Biological Process
GO:0006260 DNA replication Biological Process
GO:0006974 DNA damage response Biological Process
GO:0007276 gamete generation Biological Process
GO:0007292 female gamete generation Biological Process
GO:0030174 regulation of DNA-templated DNA replication initiation Biological Process
GO:0036298 recombinational interstrand cross-link repair Biological Process
GO:0051321 meiotic cell cycle Biological Process
GO:0005634 nucleus Cellular Component
GO:0005694 chromosome Cellular Component
GO:0042555 MCM complex Cellular Component
GO:0097362 MCM8-MCM9 complex Cellular Component
KEGG gene cross-reference
ath:AT2G14050
bta:100139498
dosa:Os06g0218500
osa:4340503
xla:431809
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.840
Rank 1 · TkA02G072590 · TK1151
Cytoplasm0.163
Rank 2 · TkA02G072590 · TK1151
Mitochondrion0.057
Rank 3 · TkA02G072590 · TK1151
Cell membrane0.020
Rank 4 · TkA02G072590 · TK1151
Plastid0.013
Rank 5 · TkA02G072590 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26066MCM9_N5-109 aa
PF26063MCMDC2_N26-70 aa
PF14551MCM_N31-81 aa
PF17207MCM_OB150-286 aa
PF23455DUF7129177-191 aa
PF09723Zn_ribbon_8179-208 aa
PF00493MCM345-548 aa
PF05272VapE-like_dom364-440 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G072590PF26066MCM9_N51097.6e-1452.3
TkA02G072590PF26063MCMDC2_N26700.312.0
TkA02G072590PF14551MCM_N31812.2e-0628.7
TkA02G072590PF17207MCM_OB1502861.7e-2280.2
TkA02G072590PF23455DUF71291771910.1112.9
TkA02G072590PF09723Zn_ribbon_81792080.113.3
TkA02G072590PF00493MCM3455486.1e-74248.6
TkA02G072590PF05272VapE-like_dom3644400.1612.2
TkA02G072590PF01580FtsK_SpoIIIE3824040.3211.1
TkA02G072590PF01078Mg_chelatase3844047.8e-0832.7
TkA02G072590PF05496RuvB_N3844800.2711.7
TkA02G072590PF13401AAA_223854150.113.6
TkA02G072590PF13191AAA_163854130.1513.2
TkA02G072590PF00158Sigma54_activat3864990.113.0
TkA02G072590PF07728AAA_53885041.1e-0629.4
TkA02G072590PF07726AAA_33885020.03214.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4IFF3Arabidopsis thalianasp|F4IFF3|MCM9_ARATH Probable DNA helicase MCM966.000%Swiss-ProtHigh
B8B406Oryza sativa subsp. indicasp|B8B406|MCM9_ORYSI Probable DNA helicase MCM965.100%Swiss-ProtHigh
Q69QA6Oryza sativa subsp. japonicasp|Q69QA6|MCM9_ORYSJ DNA helicase MCM965.000%Swiss-ProtHigh

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