TkA01G548670 | RubberDandelionOmics

Gene overview

TkA01G548670

Reference: TK1151 Chr: Chr01 Coordinates: 137819129-137823401 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1087 bp · TkA01G548670|TK1151|cDNA

TTAGATGATCTTTTAAACTTGGAGTAGCCAGTCGACTAAATATACGCATGCCGAAAACTACCCCTGAATCATGCTGCTTGCTGCACCTATGCAATGTTCATGCTGGAGGAAAAAATGGAAGCCACAATAACCAACCGAAGCTGATAACCATAGATGGCTATCAGACAAAATAAGGCAACCAAAAATCTTGGAAACCTCGAGAATCCAATAGCCATATATATAATTAATCTGTGATTTCGATTTCAGACGGCTGAGGCAGT...

CDS

Download CDS FASTA

567 bp · TkA01G548670|TK1151|CDS

ATGGCGATTCTTCAGGCATGGTTCATGGATGATGTCCAGGGGGATCCACAGCTTCCTCATCATCGCAATCCTGATGAGTTCGTCTCCCCTGATCACTTAGCAGATTTGGGCGTTTTGCACTGGAAGTTAAATCCAGACAAGTACGAGGAGGATGAAGAACTAGAGAATATCAGGGCTACCAGAGGCTACAATTACATGGATCTGCTGGACTTATGCCCTGAGAAAGTGGAGAATTATGAGCAAAAGCTTAAGAACTTCTA...

Protein

Download Protein FASTA

188 aa · TkA01G548670|TK1151|PROTEIN

MAILQAWFMDDVQGDPQLPHHRNPDEFVSPDHLADLGVLHWKLNPDKYEEDEELENIRATRGYNYMDLLDLCPEKVENYEQKLKNFYTEHIHADEEIRYCLEGSGYFDVRDKDDRWIRIWIKAGDLIILPAGIYHRFTLDTSNYIKLMRLFVGEPVWTAFNRPQEEHPARRKYIVDFGQKIRMPLEAH

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G548670`
TK1151 ID	TkA01G548670
OH-1004 ID	LXL04_001302
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.500
Protein coverage (%)	TK1151 97.872 / OH-1004 88.889 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G548670

Location Chr01:137819129-137823401 (+)

Description Similar to VIT_05s0020g04070: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g43850`	Catalyzes 2 different reactions between oxygen and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001302 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006555 methionine metabolic process Biological Process

GO:0019509 L-methionine salvage from methylthioadenosine Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0005506 iron ion binding Molecular Function

GO:0010308 acireductone dioxygenase (Ni2+-requiring) activity Molecular Function

GO:0010309 acireductone dioxygenase [iron(II)-requiring] activity Molecular Function

GO:0016151 nickel cation binding Molecular Function

KEGG gene cross-reference

ath:AT5G43850

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.703

Rank 1 · TkA01G548670 · TK1151

Nucleus0.492

Rank 2 · TkA01G548670 · TK1151

Mitochondrion0.069

Rank 3 · TkA01G548670 · TK1151

Cell membrane0.059

Rank 4 · TkA01G548670 · TK1151

Endoplasmic reticulum0.052

Rank 5 · TkA01G548670 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03079ARD5-159 aa

PF07883Cupin_215-25 aa

PF02311AraC_binding86-159 aa

PF16867DMSP_lyase87-138 aa

PF07883Cupin_289-143 aa

PF00190Cupin_190-135 aa

PF060523-HAO90-136 aa

PF12852Cupin_693-142 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G548670	`PF03079`	ARD	5	159	2e-60	204.3
TkA01G548670	`PF07883`	Cupin_2	15	25	2.4e-09	37.5
TkA01G548670	`PF02311`	AraC_binding	86	159	1e-06	29.3
TkA01G548670	`PF16867`	DMSP_lyase	87	138	0.019	15.4
TkA01G548670	`PF07883`	Cupin_2	89	143	2.4e-09	37.5
TkA01G548670	`PF00190`	Cupin_1	90	135	0.025	14.8
TkA01G548670	`PF06052`	3-HAO	90	136	0.068	13.5
TkA01G548670	`PF12852`	Cupin_6	93	142	0.07	13.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8H185`	Arabidopsis thaliana	sp\|Q8H185\|MTND4_ARATH Acireductone dioxygenase 4	75.100%	Swiss-Prot	High

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