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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G544880
Reference: TK1151 Chr: Chr01 Coordinates: 136710390-136712851 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2083 bp · TkA01G544880|TK1151|cDNA

CAAAAACAAGAAAACGACAAAAGAAAAAGAAATTTGGTTTCATTTGGCTGTCAAAAGCAACCCTTATTCATCGACCAGCTGCAATCCAATCCACATTAATCCAACAATTTGAGAGAGAGTAGGGGAGTAGAGCAAAGCACAGCAGCTCCATCGAGAGCTAGTAGATAGATAGATAGATCGTACACAGTGATAGCTGTTCCAAGAGGAAGAAAACCCTAATGATCTAAACTAGCTAGAACAACATCAACAAGTTGAGCTTC...

CDS

Download CDS FASTA

1017 bp · TkA01G544880|TK1151|CDS

ATGGCTATGGAGAATTCCAAGACAATAAGAAACATATACAGTGGAAAACACTATTCCCTTCCTCCTAAAAGCCCATTCCCAAGCATTACTCCGTTTTACCCTGATTACACTCCAACCACTGCCAAAGGGATACCAAAGTACAGGGACGGAAAGGTAAATTCACACCATCAACGCACATCTTCAGAAAGCCTTGCAATAGAGGAACAACCTTATTGGCTGGATGAACTTCTTGATGAACCAGAGACACCTGTCAGAAGAGG...

Protein

Download Protein FASTA

338 aa · TkA01G544880|TK1151|PROTEIN

MAMENSKTIRNIYSGKHYSLPPKSPFPSITPFYPDYTPTTAKGIPKYRDGKVNSHHQRTSSESLAIEEQPYWLDELLDEPETPVRRGHRRSSSDSFTYIEAANANIQHAAQIEYRLRNLNSQSHSPPSWGSQDFDLYKEARNASFYVEHNPIIKNKIRGWDSANSSQEVNKIVSPTSEKKDTTESCIDAHSDSSNTKGSISETDTKRAKQQFAQRSRVRKLQYIAELERNVQALQAEGSEVSAELKFLNQRSLILNMENK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G544880
TK1151 IDTkA01G544880
OH-1004 IDLXL04_001346
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)98.500
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G544880
LocationChr01:136710390-136712851 (+)
DescriptionSimilar to At4g06598: Uncharacterized protein At4g06598
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g06598 Uncharacterized protein At4g06598. No verified direct reference in this release
At2g42380 Transcriptional activator involved in the sporophytic control of cell wall patterning and gametophytic control of pollen development.
A conserved proline residue in the leucine zipper region of AtbZIP34 and AtbZIP61 in Arabidopsis thaliana interferes with the formation of homodimer.2007 · DOI: 10.1016/j.bbrc.2007.08.026
AtbZIP34 is required for Arabidopsis pollen wall patterning and the control of several metabolic pathways in developing pollen.2009 · DOI: 10.1007/s11103-009-9493-y

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0247100 Transcription regulator. No verified direct reference in this release
Os01g0756200 Transcription regulator. No verified direct reference in this release
Os01g0211800 Transcription regulator. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001346 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0009555 pollen development Biological Process
GO:0045893 positive regulation of DNA-templated transcription Biological Process
GO:0005634 nucleus Cellular Component
GO:0000976 transcription cis-regulatory region binding Molecular Function
GO:0003677 DNA binding Molecular Function
GO:0003700 DNA-binding transcription factor activity Molecular Function
KEGG gene cross-reference
ath:AT2G42380
ath:AT3G58120
ath:AT4G06598
dosa:Os01g0756200
dosa:Os02g0247100
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.958
Rank 1 · TkA01G544880 · TK1151
Cytoplasm0.125
Rank 2 · TkA01G544880 · TK1151
Cell membrane0.029
Rank 3 · TkA01G544880 · TK1151
Endoplasmic reticulum0.013
Rank 4 · TkA01G544880 · TK1151
Plastid0.011
Rank 5 · TkA01G544880 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF27248MJ1674_2nd104-122 aa
PF19579FtsL_2166-194 aa
PF27248MJ1674_2nd200-242 aa
PF04632FUSC209-300 aa
PF00170bZIP_1213-249 aa
PF07716bZIP_2213-240 aa
PF19579FtsL_2219-265 aa
PF06156YabA223-295 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G544880PF27248MJ1674_2nd1041220.7511.1
TkA01G544880PF19579FtsL_21661940.9310.2
TkA01G544880PF27248MJ1674_2nd2002420.7511.1
TkA01G544880PF04632FUSC2093000.3310.2
TkA01G544880PF00170bZIP_12132490.0002621.8
TkA01G544880PF07716bZIP_22132408.77.2
TkA01G544880PF19579FtsL_22192650.9310.2
TkA01G544880PF06156YabA2232950.2812.5
TkA01G544880PF06698DUF11922242371.79.6
TkA01G544880PF00170bZIP_12432720.0002621.8
TkA01G544880PF26962DUF83022492880.03514.9
TkA01G544880PF27248MJ1674_2nd2533010.7511.1
TkA01G544880PF07716bZIP_22552728.77.2
TkA01G544880PF06698DUF11922612981.79.6
TkA01G544880PF06156YabA2783160.2812.5
TkA01G544880PF07716bZIP_22783008.77.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8W3M7Arabidopsis thalianasp|Q8W3M7|Y4598_ARATH Uncharacterized protein At4g0659840.900%Swiss-ProtMedium
F4IN23Arabidopsis thalianasp|F4IN23|BZP34_ARATH Basic leucine zipper 3428.600%Swiss-ProtLow
Q6K3R9Oryza sativa subsp. japonicasp|Q6K3R9|BZP19_ORYSJ Basic leucine zipper 1950.500%Swiss-ProtLow
Q5JMK6Oryza sativa subsp. japonicasp|Q5JMK6|BZP06_ORYSJ Basic leucine zipper 653.300%Swiss-ProtLow
Q5QNI5Oryza sativa subsp. japonicasp|Q5QNI5|BZP02_ORYSJ Basic leucine zipper 231.100%Swiss-ProtMedium

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