LXL04_001346 | RubberDandelionOmics

Gene overview

LXL04_001346

Reference: OH-1004 Chr: Chr01 Coordinates: 24513484-24514809 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1029 bp · LXL04_001346|LXL04_001346|OH1004|cDNA

ATGGCTATGGAGAATTCCAAGACAATAAGAAACATATACAGTGGAAAACACTATTCCCTTCCTCCTAAAAGCCCATTCCCAAGCATTACTCCGTTTTACCCTGATTACACTCCAACCACTGCCAAAGGGATACCAAAGTACAGGGACGGAAAGGTAAATTCACACCATCAACGCACATCTTCAGAAAGCCTTGCAATAGAGGAACAACCTTATTGGCTGGATGAACTTCTTGATGAACCAGAGACACCTGTCAGAAGAGG...

CDS

Download CDS FASTA

1029 bp · LXL04_001346|LXL04_001346|OH1004|CDS

ATGGCTATGGAGAATTCCAAGACAATAAGAAACATATACAGTGGAAAACACTATTCCCTTCCTCCTAAAAGCCCATTCCCAAGCATTACTCCGTTTTACCCTGATTACACTCCAACCACTGCCAAAGGGATACCAAAGTACAGGGACGGAAAGGTAAATTCACACCATCAACGCACATCTTCAGAAAGCCTTGCAATAGAGGAACAACCTTATTGGCTGGATGAACTTCTTGATGAACCAGAGACACCTGTCAGAAGAGG...

Protein

Download Protein FASTA

342 aa · LXL04_001346|LXL04_001346|OH1004|PROTEIN

MAMENSKTIRNIYSGKHYSLPPKSPFPSITPFYPDYTPTTAKGIPKYRDGKVNSHHQRTSSESLAIEEQPYWLDELLDEPETPVRRGHRRSSSDSFTYIEAANANIQHAAQIEYRLRNLNSQSQSQSHSPPSWGSQDFDLYKEARNASFYVEHNPIIKNKNRGWDSANSSQEVNKIVSPTSEKKDTTESCIDAHSDSSNTKGSISETDTKRAKQQFAQRSRVRKLQYIAELERNVQALQAEGSEVSAELKFLNQRSLILN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_001346`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_001346

Location Chr01:24513484-24514809 (-)

Description Similar to At4g06598: Uncharacterized protein At4g06598

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g06598`	Uncharacterized protein At4g06598.	No verified direct reference in this release
`At2g42380`	Transcriptional activator involved in the sporophytic control of cell wall patterning and gametophytic control of pollen development.	A conserved proline residue in the leucine zipper region of AtbZIP34 and AtbZIP61 in Arabidopsis thaliana interferes with the formation of homodimer.2007 · DOI: 10.1016/j.bbrc.2007.08.026 AtbZIP34 is required for Arabidopsis pollen wall patterning and the control of several metabolic pathways in developing pollen.2009 · DOI: 10.1007/s11103-009-9493-y
`At3g58120`	Transcriptional activator.	A conserved proline residue in the leucine zipper region of AtbZIP34 and AtbZIP61 in Arabidopsis thaliana interferes with the formation of homodimer.2007 · DOI: 10.1016/j.bbrc.2007.08.026

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0756200`	Transcription regulator.	No verified direct reference in this release
`Os02g0247100`	Transcription regulator.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001346 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0009555 pollen development Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

KEGG gene cross-reference

ath:AT2G42380

ath:AT3G58120

ath:AT4G06598

dosa:Os01g0756200

dosa:Os02g0247100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.958

Rank 1 · LXL04_001346 · OH-1004

Cytoplasm0.125

Rank 2 · LXL04_001346 · OH-1004

Cell membrane0.029

Rank 3 · LXL04_001346 · OH-1004

Endoplasmic reticulum0.013

Rank 4 · LXL04_001346 · OH-1004

Plastid0.011

Rank 5 · LXL04_001346 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8W3M7`	Arabidopsis thaliana	Uncharacterized protein At4g06598	39.552%	Swiss-Prot	moderate database homology
`F4IN23`	Arabidopsis thaliana	Basic leucine zipper 34	55.556%	Swiss-Prot	weak database homology
`Q9M2K4`	Arabidopsis thaliana	Basic leucine zipper 61	47.863%	Swiss-Prot	weak database homology
`Q5JMK6`	Oryza sativa subsp. japonica	Basic leucine zipper 6	34.545%	Swiss-Prot	moderate database homology
`Q6K3R9`	Oryza sativa subsp. japonica	Basic leucine zipper 19	49.057%	Swiss-Prot	weak database homology

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