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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G138910
Reference: TK1151 Chr: Chr01 Coordinates: 35279759-35287287 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

5393 bp · TkA01G138910|TK1151|cDNA

GTGTTATGTTGAAAATTGCGACTTTGGTCCAAAATTCTTTTCATTAGCATTAGTGGTCCAAAAAGATGGATTTGTTGCATATTTGGTCCAAATGGTTAACGGCCGTTTATATCATCCAGTTAAATTGGTAAACCCCTATCCAGACAAGGGTATTTTCGTCTTTTTATCCCCTTTTAAATTAAATTAAAACCCTTTGACAAATGTAGCATTCTAAAACTCAAACCCAGGGTTTTCCGGTTTTCCGTCACGGTTCTGTGCGA...

CDS

Download CDS FASTA

3243 bp · TkA01G138910|TK1151|CDS

ATGACCAACATTCTGGTTTTCATCATCTTCCTTGCGATCATATTGGGGATAAAATCGCCGGGGCCTTTAAGTCATCTGGCCACCGCCCAACAGTACCCTGATCCGGAAACCCTGAAGAAAGATCCCGCCAAATTACAAGAGGCCACAAAATCCATCTATACTCGATTCAATTCGCTATCCTCACTTTTCCATGAAGATGCCATGGATGATTTTAGCTTCTGCATGAAAAACATAACTGCCGAGTGGAATGAAGCTTTTGA...

Protein

Download Protein FASTA

1080 aa · TkA01G138910|TK1151|PROTEIN

MTNILVFIIFLAIILGIKSPGPLSHLATAQQYPDPETLKKDPAKLQEATKSIYTRFNSLSSLFHEDAMDDFSFCMKNITAEWNEAFDFSSDTKFLSNCIQKTNGNILQRLCTAADIKFYVTVLSEAERQGFKITNYIKGNKNCNLKSWVSGCEPGWACSVEKDTEVDLKNKEEIPFRTTDCEPCCEGFFCPTGLTCMIPCPSGSYCPLARLNPKTNMCDPYRYQPPPGENNHSCGGADVWAAVVNSREVFCPAGFFCPSS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G138910
TK1151 IDTkA01G138910
OH-1004 IDLXL04_004521
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G138910
LocationChr01:35279759-35287287 (-)
DescriptionSimilar to ABCG28: ABC transporter G family member 28
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g60740 ABC transporter G family member 28. No verified direct reference in this release
At2g37010 Putative white-brown complex homolog protein 30. No verified direct reference in this release
At1g53390 ABC transporter G family member 24. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: B9G5Y5 ABC transporter G family member 25. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_004521 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006869 lipid transport Biological Process
GO:0009860 pollen tube growth Biological Process
GO:0015846 polyamine transport Biological Process
GO:0015878 biotin transport Biological Process
GO:0032218 riboflavin transport Biological Process
GO:0055085 transmembrane transport Biological Process
GO:0097744 renal urate salt excretion Biological Process
GO:0005886 plasma membrane Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0016020 membrane Cellular Component
GO:0016324 apical plasma membrane Cellular Component
GO:0031966 mitochondrial membrane Cellular Component
KEGG gene cross-reference
ath:AT1G53390
ath:AT2G37010
ath:AT5G60740
dosa:Os10g0442900
mcc:574307
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.764
Rank 1 · TkA01G138910 · TK1151
Cytoplasm0.144
Rank 2 · TkA01G138910 · TK1151
Endoplasmic reticulum0.094
Rank 3 · TkA01G138910 · TK1151
Lysosome / Vacuole0.064
Rank 4 · TkA01G138910 · TK1151
Golgi apparatus0.060
Rank 5 · TkA01G138910 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07219HemY_N317-360 aa
PF19055ABC2_membrane_7326-369 aa
PF28479At4g13230337-359 aa
PF13476AAA_23367-367 aa
PF13481AAA_25494-527 aa
PF00005ABC_tran498-648 aa
PF03193RsgA_GTPase506-530 aa
PF02463SMC_N507-666 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G138910PF07219HemY_N3173600.05214.4
TkA01G138910PF19055ABC2_membrane_73263693.2e-192639.6
TkA01G138910PF28479At4g132303373590.2912.1
TkA01G138910PF13476AAA_233673670.4911.7
TkA01G138910PF13481AAA_254945270.112.9
TkA01G138910PF00005ABC_tran4986483.3e-2693.2
TkA01G138910PF03193RsgA_GTPase5065300.03814.5
TkA01G138910PF02463SMC_N5076660.08313.0
TkA01G138910PF13604AAA_305075280.3211.5
TkA01G138910PF13476AAA_235075270.4911.7
TkA01G138910PF13555AAA_295085260.1712.4
TkA01G138910PF13304AAA_215095702.4e-0525.1
TkA01G138910PF13401AAA_225095310.2112.7
TkA01G138910PF13671AAA_335115408.57.4
TkA01G138910PF13604AAA_306356640.3211.5
TkA01G138910PF13304AAA_216366652.4e-0525.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FF46Arabidopsis thalianasp|Q9FF46|AB28G_ARATH ABC transporter G family member 2859.600%Swiss-ProtHigh
Q9SJK6Arabidopsis thalianasp|Q9SJK6|WBC30_ARATH Putative white-brown complex homolog protein 3056.800%Swiss-ProtHigh
Q9MAG3Arabidopsis thalianasp|Q9MAG3|AB24G_ARATH ABC transporter G family member 2454.700%Swiss-ProtHigh
B9G5Y5Oryza sativa subsp. japonicasp|B9G5Y5|AB25G_ORYSJ ABC transporter G family member 2549.100%Swiss-ProtMedium

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