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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G128550
Reference: TK1151 Chr: Chr01 Coordinates: 32455397-32467631 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

6884 bp · TkA01G128550|TK1151|cDNA

GACCTAAGACATTTGGGGCTGGGCGATATCCTGGTCCATGACTTTCATATACACTTGATAAAGTGAATGTTATTTTATTAGTTCAAAAGATATTGTTTATATTATAATAATTTAATTACATAGTTCTAATTTTTTATTTCATGCATATTGTATGATTATATAAAATGACCGCCGTTGTCGATATCCATAATTTGTACAATTACAAGTAGTCATTTTTCAGAATATTATAATCGGGCTATCGGGACAAAAGAGTCATTTGG...

CDS

Download CDS FASTA

6486 bp · TkA01G128550|TK1151|CDS

ATGAACGGCGACAATCGAAGAAGAGTAGACCGTAAAGACACAAGGATTTCCAAGAAGCAGAAGCTAATTCTCTCAGCCGAAGAAAAGCTCGAGACCAAGCTCGGCTTTGATCTATTTACCGAAGGGGAAAAACGCCTCGGCTGGCTACTCACATTTGCTACTTCGTCATGGGAGGACCAAGATACTCAGAAAGTGTATAGCTGTGTCGATCTTTTTTTTGTTTGCCAGGATGGCTCGAATTTTAAAGCCAAGTACAAGTT...

Protein

Download Protein FASTA

2161 aa · TkA01G128550|TK1151|PROTEIN

MNGDNRRRVDRKDTRISKKQKLILSAEEKLETKLGFDLFTEGEKRLGWLLTFATSSWEDQDTQKVYSCVDLFFVCQDGSNFKAKYKFRPYFYAATKDKMEMDVDAYLRRRYEGQIADIQIVEKEDLDLKNHLSGLRKTYLKISFDTVQQLMQVKSDLMHVVERNQEKFNAAEAYESIVAGKSKERIQDFIDYISDLREYDVPYHVRFAIDNDIRSGLWYDVNVSSDGVTLERRHDLLQRAEVHVCAFDIETTKLPLKFPD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G128550
TK1151 IDTkA01G128550
OH-1004 IDLXL04_004655
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.100
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G128550
LocationChr01:32455397-32467631 (+)
DescriptionSimilar to POL2A: DNA polymerase epsilon catalytic subunit A
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g08260 DNA polymerase II, which participates in chromosomal DNA replication.
Genetic analysis of two Arabidopsis DNA polymerase epsilon subunits during early embryogenesis.2005 · DOI: 10.1111/j.1365-313x.2005.02521.x
Epigenetic regulation, somatic homologous recombination, and abscisic acid signaling are influenced by DNA polymerase epsilon mutation in Arabidopsis.2009 · DOI: 10.1105/tpc.108.061549
EARLY IN SHORT DAYS 7 (ESD7) encodes the catalytic subunit of DNA polymerase epsilon and is required for flowering repression through a mechanism involving epigenetic gene silencing.2010 · DOI: 10.1111/j.1365-313x.2009.04093.x
At2g27120 DNA polymerase II, which participates in chromosomal DNA replication (By similarity).
Genetic analysis of two Arabidopsis DNA polymerase epsilon subunits during early embryogenesis.2005 · DOI: 10.1111/j.1365-313x.2005.02521.x

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_004655 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000082 G1/S transition of mitotic cell cycle Biological Process
GO:0000278 mitotic cell cycle Biological Process
GO:0000731 DNA synthesis involved in DNA repair Biological Process
GO:0006260 DNA replication Biological Process
GO:0006261 DNA-templated DNA replication Biological Process
GO:0006272 leading strand elongation Biological Process
GO:0006287 base-excision repair, gap-filling Biological Process
GO:0006297 nucleotide-excision repair, DNA gap filling Biological Process
GO:0010086 embryonic root morphogenesis Biological Process
GO:0045004 DNA replication proofreading Biological Process
GO:0048579 negative regulation of long-day photoperiodism, flowering Biological Process
GO:0051302 regulation of cell division Biological Process
KEGG gene cross-reference
afm:AFUA_3G09560
ath:AT1G08260
ath:AT2G27120
hsa:5426
mmu:18973
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.489
Rank 1 · TkA01G128550 · TK1151
Cytoplasm0.379
Rank 2 · TkA01G128550 · TK1151
Mitochondrion0.143
Rank 3 · TkA01G128550 · TK1151
Cell membrane0.062
Rank 4 · TkA01G128550 · TK1151
Endoplasmic reticulum0.048
Rank 5 · TkA01G128550 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF11902DUF3422143-179 aa
PF03104DNA_pol_B_exo1195-401 aa
PF10108DNA_pol_B_exo2307-448 aa
PF13482RNase_H_2313-410 aa
PF00136DNA_pol_B465-527 aa
PF18941DUF5688556-618 aa
PF00136DNA_pol_B596-623 aa
PF23250zf_DPOE_2618-629 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G128550PF11902DUF34221431790.07812.8
TkA01G128550PF03104DNA_pol_B_exo11954011.4e-55189.0
TkA01G128550PF10108DNA_pol_B_exo23074481e-0526.1
TkA01G128550PF13482RNase_H_23134100.0009219.9
TkA01G128550PF00136DNA_pol_B4655275.3e-1865.8
TkA01G128550PF18941DUF56885566180.008416.4
TkA01G128550PF00136DNA_pol_B5966235.3e-1865.8
TkA01G128550PF23250zf_DPOE_26186298e-1967.8
TkA01G128550PF00136DNA_pol_B76210665.3e-1865.8
TkA01G128550PF18941DUF56889389820.008416.4
TkA01G128550PF22634POL2_thumb94611214.1e-76255.6
TkA01G128550PF27999SMP199210150.1712.6
TkA01G128550PF10108DNA_pol_B_exo2149515261e-0526.1
TkA01G128550PF08490DUF1744150218621.6e-117393.3
TkA01G128550PF00136DNA_pol_B180718695.3e-1865.8
TkA01G128550PF23250zf_DPOE_2202220888e-1967.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4HW04Arabidopsis thalianasp|F4HW04|DPOE1_ARATH DNA polymerase epsilon catalytic subunit A68.500%Swiss-ProtHigh
F4IFN6Arabidopsis thalianasp|F4IFN6|DPOE2_ARATH DNA polymerase epsilon catalytic subunit B66.000%Swiss-ProtHigh

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