Gene Card
Gene overview
cDNA / CDS / Protein Sequences
6483 bp · LXL04_004655|LXL04_004655|OH1004|cDNA
ATGAACGGCGACAATCGAAGAAGAGTAGACCGTAAAGACACAAGGATTTCCAAGAAGCAGAAGCTAATTCTCTCAGCCGAAGAAAAGCTCGAGACCAAGCTCGGCTTTGATCTATTTACCGAAGGGGAAAAACGCCTCGGCTGGCTACTCACATTTGCTACTTCGTCATGGGAGGACCAAGATACTCAGAAAGTGTATAGCTGTGTCGATCTCTTTTTTGTTTGCCAGGATGGCTCGAATTTTAAAGCCAAGTACAAGTT...
6483 bp · LXL04_004655|LXL04_004655|OH1004|CDS
ATGAACGGCGACAATCGAAGAAGAGTAGACCGTAAAGACACAAGGATTTCCAAGAAGCAGAAGCTAATTCTCTCAGCCGAAGAAAAGCTCGAGACCAAGCTCGGCTTTGATCTATTTACCGAAGGGGAAAAACGCCTCGGCTGGCTACTCACATTTGCTACTTCGTCATGGGAGGACCAAGATACTCAGAAAGTGTATAGCTGTGTCGATCTCTTTTTTGTTTGCCAGGATGGCTCGAATTTTAAAGCCAAGTACAAGTT...
Protein
Download Protein FASTA2160 aa · LXL04_004655|LXL04_004655|OH1004|PROTEIN
MNGDNRRRVDRKDTRISKKQKLILSAEEKLETKLGFDLFTEGEKRLGWLLTFATSSWEDQDTQKVYSCVDLFFVCQDGSNFKAKYKFRPYFYAATKDKMEMDVDAYLRRRYEGQIADIQIVEKEDLDLKNHLSGLRKTYLKISFDTVQQLMQVKSDLMHVVERNQEKFNAAEAYESIVAGKSKERIQDFIDYISDLREYDVPYHVRFAIDNDIRSGLWYDVNVSSDGVTLERRHDLLQRAEVHVCAFDIETTKLPLKFPD...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_004655 |
|---|---|
| TK1151 ID | TkA01G128550 |
| OH-1004 ID | LXL04_004655 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.100 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_004655 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:142488041-142499980 (-) | |||||||||
| Description | Similar to POL2A: DNA polymerase epsilon catalytic subunit A | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0000082 G1/S transition of mitotic cell cycle Biological Process GO:0000278 mitotic cell cycle Biological Process GO:0000731 DNA synthesis involved in DNA repair Biological Process GO:0006260 DNA replication Biological Process GO:0006261 DNA-templated DNA replication Biological Process GO:0006272 leading strand elongation Biological Process GO:0006287 base-excision repair, gap-filling Biological Process GO:0006297 nucleotide-excision repair, DNA gap filling Biological Process GO:0010086 embryonic root morphogenesis Biological Process GO:0045004 DNA replication proofreading Biological Process GO:0048579 negative regulation of long-day photoperiodism, flowering Biological Process GO:0051302 regulation of cell division Biological Process | |||||||||
| KEGG gene cross-reference | afm:AFUA_3G09560 ath:AT1G08260 ath:AT2G27120 hsa:5426 mmu:18973 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF03104.26DNA_pol_B_exo1195-401 aaPF10108.16DNA_pol_B_exo2307-448 aaPF00136.27DNA_pol_B762-1066 aaPF22634.2POL2_thumb946-1121 aaPF08490.18DUF17441502-1862 aaPF23250.2zf_DPOE_22021-2087 aaPF22912.3zf-DPOE2093-2147 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_004655 | PF03104.26 | DNA_pol_B_exo1 | 195 | 401 | 1e-55 | 189.5 |
| LXL04_004655 | PF10108.16 | DNA_pol_B_exo2 | 307 | 448 | 1e-05 | 26.1 |
| LXL04_004655 | PF00136.27 | DNA_pol_B | 762 | 1066 | 9.2e-18 | 65.0 |
| LXL04_004655 | PF22634.2 | POL2_thumb | 946 | 1121 | 4e-76 | 255.7 |
| LXL04_004655 | PF08490.18 | DUF1744 | 1502 | 1862 | 8.1e-117 | 391.0 |
| LXL04_004655 | PF23250.2 | zf_DPOE_2 | 2021 | 2087 | 8e-19 | 67.8 |
| LXL04_004655 | PF22912.3 | zf-DPOE | 2093 | 2147 | 3.7e-13 | 50.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.