LXL04_039198 | RubberDandelionOmics

Gene overview

LXL04_039198

Reference: OH-1004 Chr: Chr09 Coordinates: 62086972-62091435 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1935 bp · LXL04_039198|LXL04_039198|OH1004|cDNA

ATGCTGGTGTTACCTAATAAAATAATAGGACCATTTCAAAGCGACGTTCTCGGTAGTGAGAGAGAGGCCTGCGCCCGGGTGAGGGGGGGTGTTTGGCTCAGTTTTCTCTCTCTTCCTGACGCTCCCAGAGACGTATCAACCCAATCGATGGCGAAGCAGCCGATGGTAGCAGTAGTAGACGGCATTGTCACCGACAAGGGTGGTCTACTACCGTACCTCCTTCTCCTTATGCTCGTTTTGATCCTCATCATTATTCTCAT...

CDS

Download CDS FASTA

1935 bp · LXL04_039198|LXL04_039198|OH1004|CDS

ATGCTGGTGTTACCTAATAAAATAATAGGACCATTTCAAAGCGACGTTCTCGGTAGTGAGAGAGAGGCCTGCGCCCGGGTGAGGGGGGGTGTTTGGCTCAGTTTTCTCTCTCTTCCTGACGCTCCCAGAGACGTATCAACCCAATCGATGGCGAAGCAGCCGATGGTAGCAGTAGTAGACGGCATTGTCACCGACAAGGGTGGTCTACTACCGTACCTCCTTCTCCTTATGCTCGTTTTGATCCTCATCATTATTCTCAT...

Protein

Download Protein FASTA

644 aa · LXL04_039198|LXL04_039198|OH1004|PROTEIN

MLVLPNKIIGPFQSDVLGSEREACARVRGGVWLSFLSLPDAPRDVSTQSMAKQPMVAVVDGIVTDKGGLLPYLLLLMLVLILIIILIACRPWRFFARSYRSRTIKTTTSSDVEDVERPLISQDSHAVESNINDQHRVSSSEHPCHQTHSSSQKHKHRLPPRPPQLSQGDSLILDISDPCEGVVVGQTLKRPVVINESAGTNHDLSNKSRIRSDNDTSKPTADQRSILTLEVISGPSSGTHYSIQSTNKAKLPLTLGRVSP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_039198`
TK1151 ID	TkA04G514880
OH-1004 ID	LXL04_039198
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	97.200
Protein coverage (%)	TK1151 100.000 / OH-1004 54.969 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_039198

Location Chr09:62086972-62091435 (+)

Description Similar to KAPP: Protein phosphatase 2C 70

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g19280`	Dephosphorylates the Ser/Thr receptor-like kinase RLK5.	The Arabidopsis kinase-associated protein phosphatase controls internalization of the somatic embryogenesis receptor kinase 1.2002 · DOI: 10.1101/gad.220402 The Arabidopsis SERK1 protein interacts with the AAA-ATPase AtCDC48, the 14-3-3 protein GF14lambda and the PP2C phosphatase KAPP.2005 · DOI: 10.1007/s00425-004-1447-7 The Arabidopsis kinase-associated protein phosphatase regulates adaptation to Na+ stress.2008 · DOI: 10.1104/pp.107.109009 A possible role for kinase-associated protein phosphatase in the Arabidopsis CLAVATA1 signaling pathway.1997 · DOI: 10.1073/pnas.94.19.10467 Control of meristem development by CLAVATA1 receptor kinase and kinase-associated protein phosphatase interactions 1998 · DOI: 10.1104/pp.117.4.1217

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0149800`	Probable protein phosphatase 2C 10.	No verified direct reference in this release
`Os04g0659500`	Probable protein phosphatase 2C 45.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_039198 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007165 signal transduction Biological Process

GO:0009934 regulation of meristem structural organization Biological Process

GO:1902531 regulation of intracellular signal transduction Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0004721 phosphoprotein phosphatase activity Molecular Function

GO:0004722 protein serine/threonine phosphatase activity Molecular Function

GO:0019901 protein kinase binding Molecular Function

GO:0046872 metal ion binding Molecular Function

GO:0050408 [pyruvate kinase]-phosphatase activity Molecular Function

KEGG gene cross-reference

ath:AT5G19280

ddi:DDB_G0279461

ddi:DDB_G0282105

dosa:Os02g0149800

dosa:Os04g0659500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.311

Rank 1 · LXL04_039198 · OH-1004

Cell membrane0.238

Rank 2 · LXL04_039198 · OH-1004

Nucleus0.232

Rank 3 · LXL04_039198 · OH-1004

Endoplasmic reticulum0.208

Rank 4 · LXL04_039198 · OH-1004

Golgi apparatus0.169

Rank 5 · LXL04_039198 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00498.32FHA254-329 aa

PF00481.27PP2C377-628 aa

PF13672.12PP2C_2405-523 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_039198	`PF00498.32`	FHA	254	329	1.1e-13	52.0
LXL04_039198	`PF00481.27`	PP2C	377	628	5e-44	151.6
LXL04_039198	`PF13672.12`	PP2C_2	405	523	2.2e-06	28.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P46014`	Arabidopsis thaliana	Protein phosphatase 2C 70	51.832%	Swiss-Prot	strong database homology
`Q67UX7`	Oryza sativa subsp. japonica	Probable protein phosphatase 2C 10	31.698%	Swiss-Prot	weak database homology
`Q7XR06`	Oryza sativa subsp. japonica	Probable protein phosphatase 2C 45	31.273%	Swiss-Prot	weak database homology

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